Evidence map›Paper›PMID 39125866›Full record

ArticleInternational journal of molecular sciences2024

Frequent Acquisition of Glycoside Hydrolase Family 32 (GH32) Genes from Bacteria via Horizontal Gene Transfer Drives Adaptation of Invertebrates to Diverse Sources of Food and Living Habitats.

Xiaoyan Cheng, Xuming Liu, Katherine W Jordan, Jingcheng Yu, Robert J Whitworth, Yoonseong Park, Ming-Shun Chen

Abstract read
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Article in International journal of molecular sciences, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Xiaoyan ChengDepartment of Entomology, 123 Waters Hall, Kansas State University, Manhattan, KS 66506, USA.
Xuming LiuDepartment of Entomology, 123 Waters Hall, Kansas State University, Manhattan, KS 66506, USA.
Katherine W JordanHard Winter Wheat Genetics Research Unit, Center for Grain and Animal Health Research, US Department of Agriculture, Agricultural Research Services, 4008 Throckmorton Hall, Kansas State University, Manhattan, KS 66506, USA.ORCID 0000-0003-1323-6824
Jingcheng YuDepartment of Biochemistry and Molecular Biophysics, 141 Chalmers Hall, Kansas State University, Manhattan, KS 66506, USA.
Robert J WhitworthDepartment of Entomology, 123 Waters Hall, Kansas State University, Manhattan, KS 66506, USA.
Yoonseong ParkDepartment of Entomology, 123 Waters Hall, Kansas State University, Manhattan, KS 66506, USA.ORCID 0000-0003-1191-7335
Ming-Shun ChenDepartment of Entomology, 123 Waters Hall, Kansas State University, Manhattan, KS 66506, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Glycoside hydrolases (GHs, also called glycosidases) catalyze the hydrolysis of glycosidic bonds in polysaccharides. Numerous GH genes have been identified from various organisms and are classified into 188 families, abbreviated GH1 to GH188. Enzymes in the GH32 family hydrolyze fructans, which are present in approximately 15% of flowering plants and are widespread across microorganisms. GH32 genes are rarely found in animals, as fructans are not a typical carbohydrate source utilized in animals. Here, we report the discovery of 242 GH32 genes identified in 84 animal species, ranging from nematodes to crabs. Genetic analyses of these genes indicated that the GH32 genes in various animals were derived from different bacteria via multiple, independent horizontal gene transfer events. The GH32 genes in animals appear functional based on the highly conserved catalytic blades and triads in the active center despite the overall low (35-60%) sequence similarities among the predicted proteins. The acquisition of GH32 genes by animals may have a profound impact on sugar metabolism for the recipient organisms. Our results together with previous reports suggest that the acquired GH32 enzymes may not only serve as digestive enzymes, but also may serve as effectors for manipulating host plants, and as metabolic enzymes in the non-digestive tissues of certain animals. Our results provide a foundation for future studies on the significance of horizontally transferred GH32 genes in animals. The information reported here enriches our knowledge of horizontal gene transfer, GH32 functions, and animal-plant interactions, which may result in practical applications. For example, developing crops via targeted engineering that inhibits GH32 enzymes could aid in the plant's resistance to animal pests.

Indexed as

BacteriaGene Transfer, HorizontalGlycoside HydrolasesPhylogenyAdaptation, PhysiologicalAnimalsEcosystemEvolution, MolecularInvertebratesGlycoside HydrolasesGH32glycoside hydrolase family 32horizontal gene transfersugar metabolism

Identifiers

PMID39125866
PMCPMC11311677

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.