Evidence map›Paper›PMID 39124917›Full record

ReviewMolecules (Basel, Switzerland)2024

AI-Assisted Rational Design and Activity Prediction of Biological Elements for Optimizing Transcription-Factor-Based Biosensors.

Nana Ding, Zenan Yuan, Zheng Ma, Yefei Wu, Lianghong Yin

Abstract readReview
In one paragraph

Review in Molecules (Basel, Switzerland), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Programming Next-Generation Synthetic Biosensors by Genetic Circuit Design.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Review
  3. Review
  4. Review
  5. Review
  6. Advancing lignocellulosic conversion though biosensor-enabled metabolic engineering.Green chemistry : an international journal and green chemistry resource : GC · 2025
    Review
  7. Review
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Nana DingState Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou 311300, China.ORCID 0000-0001-5225-4035
Zenan YuanState Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou 311300, China.
Zheng MaZhejiang Provincial Key Laboratory of Biometrology and Inspection & Quarantine, College of Life Sciences, China Jiliang University, Hangzhou 310018, China.
Yefei WuZhejiang Qianjiang Biochemical Co., Ltd., Haining 314400, China.
Lianghong YinState Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou 311300, China.

Funding

National Natural Science Foundation of China 31600070National Natural Science Foundation of China 32301218Open Project Program of State Key Laboratory of Food Science and Resources, Jiangnan Univer-sity SKLF-KF-202309Scientific Research Development Foundation of Zhejiang A&F University 2023LFR020Zhejiang Province San Nong Jiufang Science and Technology Cooperation Plan Project 2024SNJF27Zhejiang Provincial Natural Science Foundation of China LZ22C200001
6 · The paper itself

Abstract

The rational design, activity prediction, and adaptive application of biological elements (bio-elements) are crucial research fields in synthetic biology. Currently, a major challenge in the field is efficiently designing desired bio-elements and accurately predicting their activity using vast datasets. The advancement of artificial intelligence (AI) technology has enabled machine learning and deep learning algorithms to excel in uncovering patterns in bio-element data and predicting their performance. This review explores the application of AI algorithms in the rational design of bio-elements, activity prediction, and the regulation of transcription-factor-based biosensor response performance using AI-designed elements. We discuss the advantages, adaptability, and biological challenges addressed by the AI algorithms in various applications, highlighting their powerful potential in analyzing biological data. Furthermore, we propose innovative solutions to the challenges faced by AI algorithms in the field and suggest future research directions. By consolidating current research and demonstrating the practical applications and future potential of AI in synthetic biology, this review provides valuable insights for advancing both academic research and practical applications in biotechnology.

Indexed as

AlgorithmsArtificial IntelligenceBiosensing TechniquesTranscription FactorsDeep LearningHumansMachine LearningSynthetic BiologyTranscription Factorsartificial intelligencebiological elementsdeep learningmachine learningsynthetic biologytranscription-factor-based biosensor

Identifiers

PMID39124917
PMCPMC11313831

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.