Evidence map›Paper›PMID 39123272›Full record

ArticleMicrobiome2024

Globally distributed marine Gemmatimonadota have unique genomic potentials.

Xianzhe Gong, Le Xu, Marguerite V Langwig, Zhiyi Chen, Shujie Huang, Duo Zhao, Lei Su, Yan Zhang, Christopher A Francis, Jihua Liu and 2 more

Abstract read
In one paragraph

Article in Microbiome, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

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  10. Whole-Genome Analysis ofMicroorganisms · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Xianzhe GongInstitute of Marine Science and Technology, Shandong University, Qingdao, 266237, Shandong, China. xianzhe.gong@gmail.com.
Le XuInstitute of Marine Science and Technology, Shandong University, Qingdao, 266237, Shandong, China.
Marguerite V LangwigDepartment of Marine Science, Marine Science Institute, University of Texas at Austin, Austin, TX, 78373, USA.
Zhiyi ChenInstitute of Marine Science and Technology, Shandong University, Qingdao, 266237, Shandong, China.
Shujie HuangInstitute of Marine Science and Technology, Shandong University, Qingdao, 266237, Shandong, China.
Duo ZhaoInstitute of Marine Science and Technology, Shandong University, Qingdao, 266237, Shandong, China.
Lei SuState Key Laboratory of Marine Geology, Tongji University, Shanghai, 200092, China.
Yan ZhangState Key Laboratory of Marine Geology, Tongji University, Shanghai, 200092, China.
Christopher A FrancisDepartments of Earth System Science & Oceans, Stanford University, Stanford, CA, 94305, USA.
Jihua LiuInstitute of Marine Science and Technology, Shandong University, Qingdao, 266237, Shandong, China. liujihua1982@foxmail.com.
Jiangtao LiState Key Laboratory of Marine Geology, Tongji University, Shanghai, 200092, China. jtli@tongji.edu.cn.
Brett J BakerDepartment of Marine Science, Marine Science Institute, University of Texas at Austin, Austin, TX, 78373, USA. acidophile@gmail.com.

Funding

National Key Research and Development Program of China 2020YFA0608301National Natural Science Foundation of China 42072333National Natural Science Foundation of China 92351302PI Project of Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) 2021HJ01Simons Foundation LI-SIAME-00002001State Key Laboratory of Marine Geology, Tongji University MGK202009
6 · The paper itself

Abstract

backgroundGemmatimonadota bacteria are widely distributed in nature, but their metabolic potential and ecological roles in marine environments are poorly understood.

resultsHere, we obtained 495 metagenome-assembled genomes (MAGs), and associated viruses, from coastal to deep-sea sediments around the world. We used this expanded genomic catalog to compare the protein composition and update the phylogeny of these bacteria. The marine Gemmatimonadota are phylogenetically different from those previously reported from terrestrial environments. Functional analyses of these genomes revealed these marine genotypes are capable of degradation of complex organic carbon, denitrification, sulfate reduction, and oxidizing sulfide and sulfite. Interestingly, there is widespread genetic potential for secondary metabolite biosynthesis across Gemmatimonadota, which may represent an unexplored source of novel natural products. Furthermore, viruses associated with Gemmatimonadota have the potential to "hijack" and manipulate host metabolism, including the assembly of the lipopolysaccharide in their hosts.

conclusionsThis expanded genomic diversity advances our understanding of these globally distributed bacteria across a variety of ecosystems and reveals genetic distinctions between those in terrestrial and marine communities. Video Abstract.

Indexed as

MetagenomePhylogenyAquatic OrganismsGenome, BacterialGenomicsGeologic SedimentsMetagenomicsSeawaterSecondary MetabolismBiogeochemical cyclingGemmatimonadotaMarineMetabolismMetagenomicsMicrobial diversity

Identifiers

PMID39123272
PMCPMC11316326

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.