Evidence map›Paper›PMID 39123248›Full record

ArticleGenome biology2024

Inferring clonal somatic mutations directed by X chromosome inactivation status in single cells.

Ilke Demirci, Anton J M Larsson, Xinsong Chen, Johan Hartman, Rickard Sandberg, Jonas Frisén

Abstract read
In one paragraph

Article in Genome biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Ilke Demirci *Department of Cell and Molecular Biology, Karolinska Institutet, Stockholm, Sweden.
Anton J M Larsson *Department of Cell and Molecular Biology, Karolinska Institutet, Stockholm, Sweden.
Xinsong ChenDepartment of Oncology-Pathology, Karolinska Institutet, Stockholm, Sweden.
Johan HartmanDepartment of Oncology-Pathology, Karolinska Institutet, Stockholm, Sweden.
Rickard SandbergDepartment of Cell and Molecular Biology, Karolinska Institutet, Stockholm, Sweden. rickard.sandberg@ki.se.
Jonas FrisénDepartment of Cell and Molecular Biology, Karolinska Institutet, Stockholm, Sweden. jonas.frisen@ki.se.ORCID 0000-0001-5819-458X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Analysis of clonal dynamics in human tissues is enabled by somatic genetic variation. Here, we show that analysis of mitochondrial mutations in single cells is dramatically improved in females when using X chromosome inactivation to select informative clonal mutations. Applying this strategy to human peripheral mononuclear blood cells reveals clonal structures within T cells that otherwise are blurred by non-informative mutations, including the separation of gamma-delta T cells, suggesting this approach can be used to decipher clonal dynamics of cells in human tissues.

Indexed as

MutationSingle-Cell AnalysisX Chromosome InactivationChromosomes, Human, XClone CellsDNA, MitochondrialFemaleHumansLeukocytes, MononuclearMaleT-LymphocytesDNA, MitochondrialClonalityHematopoiesisMutationsX chromosome inactivation

Identifiers

PMID39123248
PMCPMC11312698

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.