Evidence map›Paper›PMID 39123119›Full record

ArticleBMC plant biology2024

The Defective in Autoregulation (DAR) gene of Medicago truncatula encodes a protein involved in regulating nodulation and arbuscular mycorrhiza.

Elise Schnabel, Sagar Bashyal, Cameron Corbett, Tessema Kassaw, Stephen Nowak, Ramsés Alejandro Rosales-García, Rooksana E Noorai, Lena Maria Müller, Julia Frugoli

Erratum issuedAbstract read
In one paragraph

Article in BMC plant biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Role of theHorticulture research · 2026
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Elise SchnabelDepartment of Genetics and Biochemistry, Clemson University, Clemson, SC, 29634, USA.
Sagar BashyalPlant Molecular and Cellular Biology Laboratory, Salk Institute for Biological Studies, La Jolla, CA, 92037, USA.
Cameron CorbettDepartment of Genetics and Biochemistry, Clemson University, Clemson, SC, 29634, USA.
Tessema KassawDepartment of Genetics and Biochemistry, Clemson University, Clemson, SC, 29634, USA.
Stephen NowakDepartment of Genetics and Biochemistry, Clemson University, Clemson, SC, 29634, USA.
Ramsés Alejandro Rosales-GarcíaDepartment of Biological Sciences, Clemson University, Clemson, SC, 29634, USA.
Rooksana E NooraiClemson University Genomics and Bioinformatics Facility, Clemson University, Clemson, SC, 29634, USA.
Lena Maria MüllerDepartment of Biology, University of Miami, Coral Gables, FL, 33124, USA.
Julia FrugoliDepartment of Genetics and Biochemistry, Clemson University, Clemson, SC, 29634, USA. jfrugol@clemson.edu.

Funding

Project 3: Isolating food insecurity to understand childhood health outcomes and biological mechanisms of riskP20GM139767 · NIGMS · MIRIAM HOSPITAL · PI KayLoni L. Olson · 2021 to 2026
$14.6M
Regulation of Cryptosporidium DevelopmentP20GM146584 · NIGMS · CLEMSON UNIVERSITY · PI JAMES Culvin MORRIS · 2022 to 2026
$13.5M
Statistical Methods for Gene Regulatory Analysis From Single Cell Genomics DataP20GM139769 · NIGMS · CLEMSON UNIVERSITY · PI ANHOLT, ROBERT R. H, MACKAY, TRUDY F. · 2021 to 2025
$10.8M
NIGMS NIH HHS P20 GM139767NIGMS NIH HHS P20 GM139769NIGMS NIH HHS P20 GM146584
6 · The paper itself

Abstract

backgroundLegumes utilize a long-distance signaling feedback pathway, termed Autoregulation of Nodulation (AON), to regulate the establishment and maintenance of their symbiosis with rhizobia. Several proteins key to this pathway have been discovered, but the AON pathway is not completely understood.

resultsWe report a new hypernodulating mutant, defective in autoregulation, with disruption of a gene, DAR (Medtr2g450550/MtrunA17_Chr2g0304631), previously unknown to play a role in AON. The dar-1 mutant produces ten-fold more nodules than wild type, similar to AON mutants with disrupted SUNN gene function. As in sunn mutants, suppression of nodulation by CLE peptides MtCLE12 and MtCLE13 is abolished in dar. Furthermore, dar-1 also shows increased root length colonization by an arbuscular mycorrhizal fungus, suggesting a role for DAR in autoregulation of mycorrhizal symbiosis (AOM). However, unlike SUNN which functions in the shoot to control nodulation, DAR functions in the root.

conclusionsDAR encodes a membrane protein that is a member of a small protein family in M. truncatula. Our results suggest that DAR could be involved in the subcellular transport of signals involved in symbiosis regulation, but it is not upregulated during symbiosis. DAR gene family members are also present in Arabidopsis, lycophytes, mosses, and microalgae, suggesting the AON and AOM may use pathway components common to other plants, even those that do not undergo either symbiosis.

Indexed as

Medicago truncatulaMycorrhizaePlant ProteinsPlant Root NodulationSymbiosisGene Expression Regulation, PlantGenes, PlantHomeostasisMutationPlant RootsRoot Nodules, PlantPlant ProteinsAOMAONAutoregulation of mycorrhizal symbiosisAutoregulation of nodulationDARHypernodulationMedicago truncatula

Identifiers

PMID39123119
PMCPMC11316349

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.