Evidence map›Paper›PMID 39123092›Full record

ArticleMetabolomics : Official journal of the Metabolomic Society2024

Endometabolic profiling of pigmented glacier ice algae: the impact of sample processing.

Elisa K Peter, Carsten Jaeger, Jan Lisec, R Sven Peters, Rey Mourot, Pamela E Rossel, Martyn Tranter, Alexandre M Anesio, Liane G Benning

Abstract read
In one paragraph

Article in Metabolomics : Official journal of the Metabolomic Society, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
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  3. Single-cell ionomes of terrestrial cryosphere algae.Communications earth & environment · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Elisa K PeterGerman Research Centre for Geosciences - GFZ, 14473, Potsdam, Germany. elisa.peter@gfz-potsdam.de.
Carsten JaegerBundesanstalt für Materialforschung und -prüfung (BAM), 12489, Berlin, Germany.
Jan LisecBundesanstalt für Materialforschung und -prüfung (BAM), 12489, Berlin, Germany.
R Sven PetersGerman Research Centre for Geosciences - GFZ, 14473, Potsdam, Germany.
Rey MourotGerman Research Centre for Geosciences - GFZ, 14473, Potsdam, Germany.
Pamela E RosselGerman Research Centre for Geosciences - GFZ, 14473, Potsdam, Germany.
Martyn TranterDepartment of Environmental Science, Aarhus University, 4000, Roskilde, Denmark.
Alexandre M AnesioDepartment of Environmental Science, Aarhus University, 4000, Roskilde, Denmark.
Liane G BenningGerman Research Centre for Geosciences - GFZ, 14473, Potsdam, Germany. liane.g.benning@gfz-potsdam.de.

Funding

European Research Council 856416Helmholtz Recruiting Initiative I-044-16-01
6 · The paper itself

Abstract

introductionGlacier ice algae, mainly Ancylonema alaskanum and Ancylonema nordenskiöldi, bloom on Greenland Ice Sheet bare ice surfaces. They significantly decrease surface albedo due to their purple-brown pigmentation, thus increasing melt. Little is known about their metabolic adaptation and factors controlling algal growth dynamics and pigment formation. A challenge in obtaining such data is the necessity of melting samples, which delays preservation and introduces bias to metabolomic analysis. There is a need to evaluate the physiological response of algae to melting and establish consistent sample processing strategies for metabolomics of ice microbial communities.

objectivesTo address the impact of sample melting procedure on metabolic characterization and establish a processing and analytical workflow for endometabolic profiling of glacier ice algae.

methodsWe employed untargeted, high-resolution mass spectrometry and tested the effect of sample melt temperature (10, 15, 20 °C) and processing delay (up to 49 h) on the metabolome and lipidome, and complemented this approach with cell counts (FlowCam), photophysiological analysis (PAM) and diversity characterization. RESULTS AND

conclusionWe putatively identified 804 metabolites, with glycerolipids, glycerophospholipids and fatty acyls being the most prominent superclasses (> 50% of identified metabolites). Among the polar metabolome, carbohydrates and amino acid-derivatives were the most abundant. We show that 8% of the metabolome is affected by melt duration, with a pronounced decrease in betaine membrane lipids and pigment precursors, and an increase in phospholipids. Controlled fast melting at 10 °C resulted in the highest consistency, and is our recommendation for future supraglacial metabolomics studies.

Indexed as

Ice CoverMetabolomicsGreenlandLipidomicsMass SpectrometryMetabolomePigmentationPigments, BiologicalPigments, BiologicalFlowCamGlacier ice algaeGreenlandHigh resolution mass spectrometryMetabolomicsPAM fluorometry

Identifiers

PMID39123092
PMCPMC11315761

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.