Evidence map›Paper›PMID 39122922›Full record

ArticleCommunications chemistry2024

Mechanism of allosteric inhibition of human p97/VCP ATPase and its disease mutant by triazole inhibitors.

Purbasha Nandi, Kira DeVore, Feng Wang, Shan Li, Joel D Walker, Thanh Tung Truong, Matthew G LaPorte, Peter Wipf, Heidi Schlager, John McCleerey and 10 more

Abstract read
In one paragraph

Article in Communications chemistry, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. CRISPR screens identify the ATPase VCP as a druggable therapeutic vulnerability in cholangiocarcinoma.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  8. A genome-scale drug discovery pipeline uncovers therapeutic targets and a unique p97 allosteric binding site inProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Purbasha Nandi *School of Molecular Sciences, Arizona State University, Tempe, AZ, USA.ORCID http://orcid.org/0000-0002-8047-2029
Kira DeVore *School of Molecular Sciences, Arizona State University, Tempe, AZ, USA.
Feng Wang *Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA.
Shan LiDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA.
Joel D WalkerUniversity of Pittsburgh Chemical Diversity Center, University of Pittsburgh, Pittsburgh, PA, USA.
Thanh Tung TruongUniversity of Pittsburgh Chemical Diversity Center, University of Pittsburgh, Pittsburgh, PA, USA.ORCID http://orcid.org/0000-0002-5263-203X
Matthew G LaPorteUniversity of Pittsburgh Chemical Diversity Center, University of Pittsburgh, Pittsburgh, PA, USA.
Peter WipfUniversity of Pittsburgh Chemical Diversity Center, University of Pittsburgh, Pittsburgh, PA, USA.ORCID http://orcid.org/0000-0001-7693-5863
Heidi SchlagerCuria Global, Albany, NY, USA.
John McCleereyCuria Global, Albany, NY, USA.ORCID http://orcid.org/0000-0001-8901-5935
William PaquetteCuria Global, Albany, NY, USA.ORCID http://orcid.org/0000-0001-8427-7231
Rod Carlo A ColumbresDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA.
Taiping GanDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA.
Yu-Ping PohBiodesign Center for Applied Structural Discovery, Arizona State University, Tempe, AZ, USA.
Petra FrommeSchool of Molecular Sciences, Arizona State University, Tempe, AZ, USA.
Andrew J FlintLeidos Biomedical Research, Inc., Frederick National Laboratory for Cancer Research, Frederick, MD, USA.
Mark WolfCuria Global, Albany, NY, USA.
Donna M HurynUniversity of Pittsburgh Chemical Diversity Center, University of Pittsburgh, Pittsburgh, PA, USA.
Tsui-Fen ChouDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA. tfchou@caltech.edu.ORCID http://orcid.org/0000-0003-2410-2186
Po-Lin ChiuSchool of Molecular Sciences, Arizona State University, Tempe, AZ, USA. plchiu@asu.edu.ORCID http://orcid.org/0000-0001-8608-7650

Funding

WORK ORDER 126643 B539 EXPAND IC SUITE75N91019D00024 · NIAID · LEIDOS BIOMEDICAL RESEARCH, INC. · PI PENDLETON, RICHARD · 2019 to 2025
$3932.6M
National Science Foundation (NSF) MRI 1531991NCI NIH HHS 75N91019D00024
6 · The paper itself

Abstract

Human p97 ATPase is crucial in various cellular processes, making it a target for inhibitors to treat cancers, neurological, and infectious diseases. Triazole allosteric p97 inhibitors have been demonstrated to match the efficacy of CB-5083, an ATP-competitive inhibitor, in cellular models. However, the mechanism is not well understood. This study systematically investigates the structures of new triazole inhibitors bound to  both wild-type and disease mutant forms of p97 and measures their effects on function. These inhibitors bind at the interface of the D1 and D2 domains of each p97 subunit, shifting surrounding helices and altering the loop structures near the C-terminal α2 G helix to modulate domain-domain communications. A key structural moiety of the inhibitor affects the rotameric conformations of interacting side chains, indirectly modulating the N-terminal domain conformation in p97 R155H mutant. The differential effects of inhibitor binding to wild-type and mutant p97 provide insights into drug design with enhanced specificity, particularly for oncology applications.

Identifiers

PMID39122922
PMCPMC11316111

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.