Evidence map›Paper›PMID 39122888›Full record

ArticleEMBO molecular medicine2024

Comprehensive molecular characterization of collecting duct carcinoma for therapeutic vulnerability.

Peiyong Guan, Jianfeng Chen, Chengqiang Mo, Tomoya Fukawa, Chao Zhang, Xiuyu Cai, Mei Li, Jing Han Hong, Jason Yongsheng Chan, Cedric Chuan Young Ng and 18 more

Abstract read
In one paragraph

Article in EMBO molecular medicine, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors.

Peiyong Guan *Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A*STAR), 60 Biopolis Street, Genome, Singapore, 138672, Republic of Singapore.ORCID 0000-0001-9958-0137
Jianfeng Chen *State Key Laboratory of Oncology in South China, Guangdong Provincial Clinical Research Center for Cancer, Collaborative Innovation Center for Cancer Medicine, Sun Yat-sen University Cancer Center, Guangzhou, P. R. China.ORCID 0000-0002-4182-145X
Chengqiang Mo *Department of Urology, The First Affiliated Hospital of Sun Yat-sen University, Guangzhou, PR China.
Tomoya Fukawa *Department of Urology, Tokushima University Graduate School of Biomedical Sciences, Tokushima, Japan.
Chao ZhangDepartment of Genitourinary Oncology, Tianjin Medical University Cancer Institute and Hospital, National Clinical Research Center of Cancer, Tianjin Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, Tianjin, P. R. China.
Xiuyu CaiState Key Laboratory of Oncology in South China, Guangdong Provincial Clinical Research Center for Cancer, Collaborative Innovation Center for Cancer Medicine, Sun Yat-sen University Cancer Center, Guangzhou, P. R. China.
Mei LiState Key Laboratory of Oncology in South China, Guangdong Provincial Clinical Research Center for Cancer, Collaborative Innovation Center for Cancer Medicine, Sun Yat-sen University Cancer Center, Guangzhou, P. R. China.
Jing Han HongCancer and Stem Cell Biology Programme, Duke-NUS Medical School, Singapore, Republic of Singapore.
Jason Yongsheng ChanDivision of Medical Oncology, National Cancer Centre Singapore, Singapore, Republic of Singapore.ORCID 0000-0002-4801-3703
Cedric Chuan Young NgLaboratory of Cancer Epigenome, Division of Medical Sciences, National Cancer Centre Singapore, Singapore, Republic of Singapore.ORCID 0000-0002-7150-4674
Jing Yi LeeLaboratory of Cancer Epigenome, Division of Medical Sciences, National Cancer Centre Singapore, Singapore, Republic of Singapore.
Suet Far WongLaboratory of Cancer Epigenome, Division of Medical Sciences, National Cancer Centre Singapore, Singapore, Republic of Singapore.
Wei LiuLaboratory of Cancer Epigenome, Division of Medical Sciences, National Cancer Centre Singapore, Singapore, Republic of Singapore.
Xian ZengState Key Laboratory of Oncology in South China, Guangdong Provincial Clinical Research Center for Cancer, Collaborative Innovation Center for Cancer Medicine, Sun Yat-sen University Cancer Center, Guangzhou, P. R. China.
Peili WangState Key Laboratory of Oncology in South China, Guangdong Provincial Clinical Research Center for Cancer, Collaborative Innovation Center for Cancer Medicine, Sun Yat-sen University Cancer Center, Guangzhou, P. R. China.
Rong XiaoState Key Laboratory of Oncology in South China, Guangdong Provincial Clinical Research Center for Cancer, Collaborative Innovation Center for Cancer Medicine, Sun Yat-sen University Cancer Center, Guangzhou, P. R. China.ORCID 0000-0003-3245-3218
Vikneswari RajasegaranLaboratory of Cancer Epigenome, Division of Medical Sciences, National Cancer Centre Singapore, Singapore, Republic of Singapore.
Swe Swe MyintLaboratory of Cancer Epigenome, Division of Medical Sciences, National Cancer Centre Singapore, Singapore, Republic of Singapore.
Abner Ming Sun LimLaboratory of Cancer Epigenome, Division of Medical Sciences, National Cancer Centre Singapore, Singapore, Republic of Singapore.
Joe Poh Sheng YeongInstitute of Molecular and Cell Biology (IMCB), Agency of Science, Technology and Research (A*STAR), Singapore, Republic of Singapore.
Puay Hoon TanDepartment of Anatomical Pathology, Singapore General Hospital, Singapore, Republic of Singapore.
Choon Kiat OngLymphoma Genomic Translational Research Laboratory, National Cancer Centre Singapore, Singapore, Republic of Singapore.ORCID 0000-0001-6402-4288
Tao XuDepartment of Urology, Peking University People's Hospital, Beijing, 100044, China.
Yiqing DuDepartment of Urology, Peking University People's Hospital, Beijing, 100044, China.
Fan BaiBiomedical Pioneering Innovation Center (BIOPIC), Beijing Advanced Innovation Center for Genomics (ICG), School of Life Sciences, Peking University, Beijing, 100871, China.ORCID 0000-0001-6119-8936
Xin YaoDepartment of Genitourinary Oncology, Tianjin Medical University Cancer Institute and Hospital, National Clinical Research Center of Cancer, Tianjin Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, Tianjin, P. R. China. yaoxin@tjmuch.com.ORCID 0000-0002-1544-7273
Bin Tean TehGenome Institute of Singapore (GIS), Agency for Science, Technology and Research (A*STAR), 60 Biopolis Street, Genome, Singapore, 138672, Republic of Singapore. teh.bin.tean@singhealth.com.sg.ORCID 0000-0003-1514-1124
Jing TanState Key Laboratory of Oncology in South China, Guangdong Provincial Clinical Research Center for Cancer, Collaborative Innovation Center for Cancer Medicine, Sun Yat-sen University Cancer Center, Guangzhou, P. R. China. tanjing@sysucc.org.cn.ORCID 0000-0002-4605-4624

Funding

Bureau of Science and Information Technology of Guangzhou Municipality | Guangzhou Municipal Science and Technology Program key projects (Guangzhou Science and Technology Program key projects) 2022B01J1004Duke-NUS Medical School (DukeNUS) Khoo Pre-Doctoral FellowshipMOH | National Medical Research Council (NMRC) MOH-000248-00MOH | National Medical Research Council (NMRC) MOH-001152-00MOST | National Key Research and Development Program of China (NKPs) 2022YFA1304000MOST | National Natural Science Foundation of China (NSFC) 82073391MOST | National Natural Science Foundation of China (NSFC) 82170188MOST | National Natural Science Foundation of China (NSFC) 82320108015SingHealth (SG) 08/FY2018/EX(SL)/45-A86SingHealth (SG) Tan Yew Oo Professorship in Pathology
6 · The paper itself

Abstract

Collecting duct carcinoma (CDC) is an aggressive rare subtype of kidney cancer with unmet clinical needs. Little is known about its underlying molecular alterations and etiology, primarily due to its rarity, and lack of preclinical models. This study aims to comprehensively characterize molecular alterations in CDC and identify its therapeutic vulnerabilities. Through whole-exome and transcriptome sequencing, we identified KRAS hotspot mutations (G12A/D/V) in 3/13 (23%) of the patients, in addition to known TP53, NF2 mutations. 3/13 (23%) patients carried a mutational signature (SBS22) caused by aristolochic acid (AA) exposures, known to be more prevalent in Asia, highlighting a geologically specific disease etiology. We further discovered that cell cycle-related pathways were the most predominantly dysregulated pathways. Our drug screening with our newly established CDC preclinical models identified a CDK9 inhibitor LDC000067 that specifically inhibited CDC tumor growth and prolonged survival. Our study not only improved our understanding of oncogenic molecular alterations of Asian CDC, but also identified cell-cycle machinery as a therapeutic vulnerability, laying the foundation for clinical trials to treat patients with such aggressive cancer.

Indexed as

Carcinoma, Renal CellKidney NeoplasmsAgedAnimalsAntineoplastic AgentsAristolochic AcidsCell Line, TumorExome SequencingFemaleHumansMaleMiceMiddle AgedMutationProto-Oncogene Proteins p21(ras)Antineoplastic AgentsAristolochic AcidsKRAS protein, humanProto-Oncogene Proteins p21(ras)Cell-Cycle MachineryCollecting Duct CarcinomaDrug ScreeningTranscriptome ProfilingWhole Exome Sequencing

Identifiers

PMID39122888
PMCPMC11393068

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.