Evidence map›Paper›PMID 39122693›Full record

ArticleNature communications2024

DEAD-box ATPase Dbp2 is the key enzyme in an mRNP assembly checkpoint at the 3'-end of genes and involved in the recycling of cleavage factors.

Ebru Aydin, Silke Schreiner, Jacqueline Böhme, Birte Keil, Jan Weber, Bojan Žunar, Timo Glatter, Cornelia Kilchert

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
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  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Ebru AydinInstitute of Biochemistry, Justus-Liebig University Giessen, Giessen, Germany.ORCID 0009-0007-8992-4259
Silke SchreinerInstitute of Biochemistry, Justus-Liebig University Giessen, Giessen, Germany.
Jacqueline BöhmeInstitute of Biochemistry, Justus-Liebig University Giessen, Giessen, Germany.
Birte KeilInstitute of Biochemistry, Justus-Liebig University Giessen, Giessen, Germany.
Jan WeberInstitute of Biochemistry, Justus-Liebig University Giessen, Giessen, Germany.ORCID 0009-0003-6771-354X
Bojan ŽunarDepartment of Chemistry and Biochemistry, University of Zagreb Faculty of Food Technology and Biotechnology, Zagreb, Croatia.ORCID 0000-0002-6855-7222
Timo GlatterMax Planck Institute for Terrestrial Microbiology, Marburg, Germany.ORCID 0000-0001-8716-8516
Cornelia KilchertInstitute of Biochemistry, Justus-Liebig University Giessen, Giessen, Germany. cornelia.kilchert@chemie.bio.uni-giessen.de.ORCID 0000-0001-6834-0704

Funding

Deutsche Forschungsgemeinschaft (German Research Foundation) 325443116Deutsche Forschungsgemeinschaft (German Research Foundation) KI1657/2-1Deutsche Forschungsgemeinschaft (German Research Foundation) KI1657/3-1
6 · The paper itself

Abstract

mRNA biogenesis in the eukaryotic nucleus is a highly complex process. The numerous RNA processing steps are tightly coordinated to ensure that only fully processed transcripts are released from chromatin for export from the nucleus. Here, we present the hypothesis that fission yeast Dbp2, a ribonucleoprotein complex (RNP) remodelling ATPase of the DEAD-box family, is the key enzyme in an RNP assembly checkpoint at the 3'-end of genes. We show that Dbp2 interacts with the cleavage and polyadenylation complex (CPAC) and localises to cleavage bodies, which are enriched for 3'-end processing factors and proteins involved in nuclear RNA surveillance. Upon loss of Dbp2, 3'-processed, polyadenylated RNAs accumulate on chromatin and in cleavage bodies, and CPAC components are depleted from the soluble pool. Under these conditions, cells display an increased likelihood to skip polyadenylation sites and a delayed transcription termination, suggesting that levels of free CPAC components are insufficient to maintain normal levels of 3'-end processing. Our data support a model in which Dbp2 is the active component of an mRNP remodelling checkpoint that licenses RNA export and is coupled to CPAC release.

Indexed as

DEAD-box RNA HelicasesRibonucleoproteinsSchizosaccharomycesSchizosaccharomyces pombe ProteinsCell NucleusChromatinmRNA Cleavage and Polyadenylation FactorsPolyadenylationRNA, FungalRNA, MessengerChromatinDEAD-box RNA Helicasesmessenger ribonucleoproteinmRNA Cleavage and Polyadenylation FactorsRibonucleoproteinsRNA, FungalRNA, MessengerSchizosaccharomyces pombe Proteins

Identifiers

PMID39122693
PMCPMC11315920

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.