Evidence map›Paper›PMID 39122682›Full record

ArticleNature communications2024

Super enhancer acquisition drives expression of oncogenic PPP1R15B that regulates protein homeostasis in multiple myeloma.

Sinan Xiong, Jianbiao Zhou, Tze King Tan, Tae-Hoon Chung, Tuan Zea Tan, Sabrina Hui-Min Toh, Nicole Xin Ning Tang, Yunlu Jia, Yi Xiang See, Melissa Jane Fullwood and 2 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Sinan XiongDepartment of Medicine, Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Singapore.ORCID 0000-0003-3761-2505
Jianbiao ZhouDepartment of Medicine, Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Singapore. csizjb@nus.edu.sg.ORCID 0000-0002-5679-671X
Tze King TanCancer Science Institute of Singapore, National University of Singapore, Singapore, Singapore.ORCID 0000-0003-1623-615X
Tae-Hoon ChungCancer Science Institute of Singapore, National University of Singapore, Singapore, Singapore.ORCID 0000-0003-1737-6322
Tuan Zea TanCancer Science Institute of Singapore, National University of Singapore, Singapore, Singapore.ORCID 0000-0001-6624-1593
Sabrina Hui-Min TohCancer Science Institute of Singapore, National University of Singapore, Singapore, Singapore.ORCID 0009-0008-9206-2036
Nicole Xin Ning TangCancer Science Institute of Singapore, National University of Singapore, Singapore, Singapore.ORCID 0009-0006-2147-790X
Yunlu JiaDepartment of Surgical Oncology, Sir Run Run Shaw Hospital, Zhejiang University, Hangzhou, China.
Yi Xiang SeeCancer Science Institute of Singapore, National University of Singapore, Singapore, Singapore.ORCID 0000-0001-6511-8833
Melissa Jane FullwoodCancer Science Institute of Singapore, National University of Singapore, Singapore, Singapore.
Takaomi SandaDepartment of Medicine, Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Singapore.ORCID 0000-0003-1621-4954
Wee-Joo ChngDepartment of Medicine, Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Singapore. mdccwj@nus.edu.sg.ORCID 0000-0003-2578-8335

Funding

Ministry of Education - Singapore (MOE) MOH-000527-00MOH | National Medical Research Council (NMRC) CIRG19nov-0006
6 · The paper itself

Abstract

Multiple myeloma is a hematological malignancy arising from immunoglobulin-secreting plasma cells. It remains poorly understood how chromatin rewiring of regulatory elements contributes to tumorigenesis and therapy resistance in myeloma. Here we generate a high-resolution contact map of myeloma-associated super-enhancers by integrating H3K27ac ChIP-seq and HiChIP from myeloma cell lines, patient-derived myeloma cells and normal plasma cells. Our comprehensive transcriptomic and phenomic analyses prioritize candidate genes with biological and clinical implications in myeloma. We show that myeloma cells frequently acquire SE that transcriptionally activate an oncogene PPP1R15B, which encodes a regulatory subunit of the holophosphatase complex that dephosphorylates translation initiation factor eIF2α. Epigenetic silencing or knockdown of PPP1R15B activates pro-apoptotic eIF2α-ATF4-CHOP pathway, while inhibiting protein synthesis and immunoglobulin production. Pharmacological inhibition of PPP1R15B using Raphin1 potentiates the anti-myeloma effect of bortezomib. Our study reveals that myeloma cells are vulnerable to perturbation of PPP1R15B-dependent protein homeostasis, highlighting a promising therapeutic strategy.

Indexed as

Gene Expression Regulation, NeoplasticMultiple MyelomaProtein Phosphatase 1ProteostasisSuper EnhancersTranscription Factor CHOPActivating Transcription Factor 4AnimalsBortezomibCell Line, TumorEukaryotic Initiation Factor-2HumansActivating Transcription Factor 4ATF4 protein, humanBortezomibDDIT3 protein, humanEukaryotic Initiation Factor-2Protein Phosphatase 1Transcription Factor CHOP

Identifiers

PMID39122682
PMCPMC11316114

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.