Evidence map›Paper›PMID 39121442›Full record

ArticleJournal of clinical oncology : official journal of the American Society of Clinical Oncology2024

Genomic Determinants of Outcome in Acute Lymphoblastic Leukemia.

Ti-Cheng Chang, Wenan Chen, Chunxu Qu, Zhongshan Cheng, Dale Hedges, Abdelrahman Elsayed, Stanley B Pounds, Mary Shago, Karen R Rabin, Elizabeth A Raetz and 27 more

Abstract read
In one paragraph

Article in Journal of clinical oncology : official journal of the American Society of Clinical Oncology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed.

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  13. A novelBlood science (Baltimore, Md.) · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

37 authors.

Ti-Cheng ChangCenter for Applied Bioinformatics, St Jude Children's Research Hospital, Memphis, TN.ORCID 0000-0001-5302-9147
Wenan ChenCenter for Applied Bioinformatics, St Jude Children's Research Hospital, Memphis, TN.ORCID 0000-0003-0379-2368
Chunxu QuDepartment of Pathology, St Jude Children's Research Hospital, Memphis, TN.
Zhongshan ChengCenter for Applied Bioinformatics, St Jude Children's Research Hospital, Memphis, TN.
Dale HedgesCenter for Applied Bioinformatics, St Jude Children's Research Hospital, Memphis, TN.
Abdelrahman ElsayedDepartment of Biostatistics, St Jude Children's Research Hospital, Memphis, TN.
Stanley B PoundsDepartment of Biostatistics, St Jude Children's Research Hospital, Memphis, TN.
Mary ShagoDepartment of Laboratory Medicine and Pathobiology, University of Toronto, Toronto, ON, Canada.
Karen R RabinDepartment of Pediatrics, Baylor College of Medicine, Houston, TX.ORCID 0000-0002-4081-8195
Elizabeth A RaetzDepartment of Pediatrics, Perlmutter Cancer Center, NYU Langone Hospital, New York, NY.ORCID 0000-0002-8547-1658
Meenakshi DevidasGlobal Pediatric Medicine, St Jude Children's Research Hospital, Memphis, TN.ORCID 0000-0002-1099-3478
Cheng ChengDepartment of Biostatistics, St Jude Children's Research Hospital, Memphis, TN.
Anne AngiolilloChildren's National Medical Center, Washington, DC.
Pradyuamna BaviskarDepartment of Pathology, St Jude Children's Research Hospital, Memphis, TN.ORCID 0000-0003-1110-5695
Michael BorowitzDepartment of Pathology, Johns Hopkins University, Baltimore, MD.
Michael J BurkeDivision of Pediatric Hematology-Oncology, Medical College of Wisconsin, Milwaukee, WI.ORCID 0000-0001-6626-2773
Andrew CarrollDepartment of Genetics, University of Alabama at Birmingham, Birmingham, AL.ORCID 0000-0001-9844-730X
William L CarrollDepartment of Pediatrics, Perlmutter Cancer Center, NYU Langone Hospital, New York, NY.
I-Ming ChenDepartment of Pathology, University of New Mexico, Albuquerque, NM.
Richard HarveyDepartment of Pathology, University of New Mexico, Albuquerque, NM.ORCID 0000-0002-4904-9767
Nyla HeeremaThe Ohio State University, Columbus, OH.
Ilaria IacobucciDepartment of Pathology, St Jude Children's Research Hospital, Memphis, TN.ORCID 0000-0003-2008-1365
Jeremy R WangDepartment of Genetics, School of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, NC.ORCID 0000-0002-0673-9418
Sima JehaDepartment of Oncology, St Jude Children's Research Hospital, Memphis, TN.ORCID 0000-0003-2835-5869
Eric LarsenDepartment of Pediatrics, Maine Children's Cancer Program, Scarborough, ME.
Leonard MattanoHARP Pharma Consulting, Mystic, CT.ORCID 0000-0002-8409-0589
Kelly MaloneyDepartment of Pediatrics and Children's Hospital Colorado, University of Colorado, Aurora, CO.ORCID 0000-0002-3711-9529
Ching-Hon PuiDepartment of Oncology, St Jude Children's Research Hospital, Memphis, TN.ORCID 0000-0003-0303-5658
Nilsa C RamirezDepartments of Pathology and Pediatrics, Institute for Genomic Medicine and Biopathology Center, Nationwide Children's Hospital, Ohio State University, Columbus, OH.ORCID 0000-0002-9945-9449
Wanda SalzerUniformed Services University, School of Medicine, Bethesda, MD.
Cheryl WillmanDepartment of Laboratory Medicine and Pathology and Mayo Clinic Comprehensive Cancer Center, Mayo Clinic, Rochester, MN.ORCID 0000-0002-1524-2622
Naomi WinickDepartment of Pediatric Hematology Oncology and Simmons Cancer Center, University of Texas Southwestern Medical Center, Dallas, TX.
Brent WoodDepartment of Pathology and Laboratory Medicine, Children's Hospital Los Angeles, University of Southern California, Los Angeles, CA.ORCID 0000-0001-7414-3969
Stephen P HungerDepartment of Pediatrics and the Center for Childhood Cancer Research, Children's Hospital of Philadelphia, and the Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA.ORCID 0000-0002-5492-3957
Gang WuCenter for Applied Bioinformatics, St Jude Children's Research Hospital, Memphis, TN.
Charles G MullighanDepartment of Pathology, St Jude Children's Research Hospital, Memphis, TN.ORCID 0000-0002-1871-1850
Mignon L LohDepartment of Pediatrics and the Ben Towne Center for Childhood Cancer Research, Seattle Children's Hospital, University of Washington, Seattle, WA.ORCID 0000-0003-4099-4700

Funding

NCTN BIQSFP ANBL1531 (NRT)U10CA180886 · NCI · PUBLIC HEALTH INSTITUTE · PI Douglas S. Hawkins · 2014 to 2026
$390.6M
COG FOREIGN ACCRUALU10CA098543 · NCI · NATIONAL CHILDHOOD CANCER FOUNDATION · PI ADAMSON, PETER C. · 2003 to 2013
$335.5M
Translational Bioimaging Core Shared ResourceP30CA015704 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Eric Collisson · 1985 to 2026
$296.4M
Viral Vector Technology (VVTSR)P30CA021765 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CHARLES ROBERTS · 1985 to 2026
$166.9M
COG SDMC - Statistics CoreU10CA180899 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI TODD A ALONZO · 2014 to 2026
$132.8M
Children's Oncology Group Statistics &Data Center GrantU10CA098413 · NCI · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI DEVIDAS, MEENAKSHI · 2003 to 2013
$67.5M
COG U24 Funding 2026-2027U24CA196173 · NCI · RESEARCH INST NATIONWIDE CHILDREN'S HOSP · PI Mignon Lee-Cheun Loh, Nilsa Del Carmen Ramirez Milan · 2015 to 2026
$62.5M
Support for Human Specimen Banking in NCI-Supported Cancer Clinical TrialsU24CA114766 · NCI · RESEARCH INST NATIONWIDE CHILDREN'S HOSP · PI RAMIREZ MILAN, NILSA DEL CARMEN · 2005 to 2014
$14.5M
Translating genomic discoveries to improved outcomes for high risk acute leukemiaR35CA197695 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI Charles G Mullighan · 2017 to 2026
$11.4M
Characterization of Diverse Pediatric Cancers in LMIC Using Low-Cost Nanopore SequencingR01CA293366 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Thomas Blick Alexander, Jeremy R Wang · 2024 to 2026
$3.0M
Targeted Therapies for Childhood Acute Lymphoblastic LeukemiaRC2CA148529 · NCI · NATIONAL CHILDHOOD CANCER FOUNDATION · PI BOROWITZ, MICHAEL J, DEVIDAS, MEENAKSHI · 2009 to 2010
$1.7M
Identifying the spectrum of genetic alterations in high risk ALLRC4CA156329 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI HUNGER, STEPHEN PATRICK, LOH, MIGNON LEE-CHEUN · 2010 to 2010
$1.6M
NCI NIH HHS HHSN261201500003CNCI NIH HHS HHSN261201500003INCI NIH HHS P30 CA015704NCI NIH HHS P30 CA021765NCI NIH HHS R01 CA293366NCI NIH HHS R35 CA197695NCI NIH HHS RC2 CA148529NCI NIH HHS RC4 CA156329NCI NIH HHS U10 CA098413NCI NIH HHS U10 CA098543NCI NIH HHS U10 CA180886NCI NIH HHS U10 CA180899NCI NIH HHS U24 CA114766NCI NIH HHS U24 CA196173
6 · The paper itself

Abstract

purposeAlthough cure rates for childhood acute lymphoblastic leukemia (ALL) exceed 90%, ALL remains a leading cause of cancer death in children. Half of relapses arise in children initially classified with standard-risk (SR) disease. MATERIALS AND

methodsTo identify genomic determinants of relapse in children with SR ALL, we performed genome and transcriptome sequencing of diagnostic and remission samples of children with SR (n = 1,381) or high-risk B-ALL with favorable cytogenetic features (n = 115) enrolled on Children's Oncology Group trials. We used a case-control study design analyzing 439 patients who relapsed and 1,057 who remained in complete remission for at least 5 years.

resultsGenomic subtype was associated with relapse, which occurred in approximately 50% of cases of

conclusionGenetic subtype, patterns of aneuploidy, and secondary genomic alterations determine risk of relapse in childhood ALL. Comprehensive genomic analysis is required for optimal risk stratification.

Indexed as

Precursor Cell Lymphoblastic Leukemia-LymphomaAdolescentCase-Control StudiesChildChild, PreschoolFemaleGenomicsHumansInfantMalePAX5 Transcription FactorPAX5 protein, humanPAX5 Transcription Factor

Identifiers

PMID39121442
PMCPMC11458106

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.