Evidence map›Paper›PMID 39121216›Full record

ArticleScience advances2024

Photoreception and signaling in bacterial phytochrome revealed by single-particle cryo-EM.

Tek Narsingh Malla, Carolina Hernandez, Srinivasan Muniyappan, David Menendez, Dorina Bizhga, Joshua H Mendez, Peter Schwander, Emina A Stojković, Marius Schmidt

Abstract read
In one paragraph

Article in Science advances, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Article
  3. Structures of Myxobacterial Phytochrome Revealed by Cryo-EM.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  4. Article
  5. Article
  6. Article
  7. Milestones in the development ofJournal of bacteriology · 2025
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Photomorphogenesis of Myxococcus macrosporus: new insights for light-regulation of cell development.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Tek Narsingh MallaDepartment of Physics, University of Wisconsin-Milwaukee, Milwaukee, WI 53211, USA.ORCID 0000-0002-1387-0801
Carolina HernandezNew York Structural Biology Center (NYSBC), New York, NY 10027, USA.ORCID 0000-0003-4183-9008
Srinivasan MuniyappanDepartment of Physics, University of Wisconsin-Milwaukee, Milwaukee, WI 53211, USA.ORCID 0000-0001-9428-3846
David MenendezDepartment of Biology, Northeastern Illinois University, Chicago, IL 60625, USA.ORCID 0009-0006-9680-029X
Dorina BizhgaDepartment of Biology, Northeastern Illinois University, Chicago, IL 60625, USA.ORCID 0000-0002-9705-4077
Joshua H MendezNew York Structural Biology Center (NYSBC), New York, NY 10027, USA.ORCID 0000-0002-3317-5654
Peter SchwanderDepartment of Physics, University of Wisconsin-Milwaukee, Milwaukee, WI 53211, USA.ORCID 0000-0003-2350-8838
Emina A StojkovićDepartment of Biology, Northeastern Illinois University, Chicago, IL 60625, USA.ORCID 0000-0002-4971-5213
Marius SchmidtDepartment of Physics, University of Wisconsin-Milwaukee, Milwaukee, WI 53211, USA.ORCID 0000-0002-0962-9468

Funding

TRD #3: An automated and streamlined pipeline for in-situ molecular microscopyP41GM103310 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI DE MARCO, ALEX, KIEFT, JEFFREY S · 2012 to 2021
$14.7M
NU-STARS for Northeastern Illinois Student Training in Academic Research in the SciencesT34GM105549 · NIGMS · NORTHEASTERN ILLINOIS UNIVERSITY · PI CHURCH, RUTH B, HIBDON, JOSEPH EDWARD · 2014 to 2023
$2.8M
NIGMS NIH HHS P41 GM103310NIGMS NIH HHS T34 GM105549
6 · The paper itself

Abstract

Phytochromes are red-light photoreceptors discovered in plants with homologs in bacteria and fungi that regulate a variety of physiological responses. They display a reversible photocycle between two distinct states: a red-light-absorbing Pr state and a far-red light-absorbing Pfr state. The photoconversion regulates the activity of an enzymatic domain, usually a histidine kinase (HK). The molecular mechanism that explains how light controls the HK activity is not understood because structures of unmodified bacterial phytochromes with HK activity are missing. Here, we report three cryo-electron microscopy structures of a wild-type bacterial phytochrome with HK activity determined as Pr and Pfr homodimers and as a Pr/Pfr heterodimer with individual subunits in distinct states. We propose that the Pr/Pfr heterodimer is a physiologically relevant signal transduction intermediate. Our results offer insight into the molecular mechanism that controls the enzymatic activity of the HK as part of a bacterial two-component system that perceives and transduces light signals.

Indexed as

Cryoelectron MicroscopyPhytochromeSignal TransductionBacterial ProteinsHistidine KinaseLightModels, MolecularPhotoreceptors, MicrobialProtein MultimerizationBacterial ProteinsHistidine KinasePhotoreceptors, MicrobialPhytochrome

Identifiers

PMID39121216
PMCPMC11313861

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.