Evidence map›Paper›PMID 39120315›Full record

ReviewCells2024

Nuclear Receptors and the Hidden Language of the Metabolome.

Yujie Chen, Matthew Tom Anderson, Nathaniel Payne, Fabio R Santori, Natalia B Ivanova

Abstract readReview
In one paragraph

Review in Cells, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Yujie ChenCenter for Molecular Medicine, University of Georgia, Athens, GA 30602, USA.
Matthew Tom AndersonCenter for Molecular Medicine, University of Georgia, Athens, GA 30602, USA.ORCID 0009-0007-3812-3718
Nathaniel PayneCenter for Molecular Medicine, University of Georgia, Athens, GA 30602, USA.
Fabio R SantoriCenter for Molecular Medicine, University of Georgia, Athens, GA 30602, USA.ORCID 0000-0002-0220-8935
Natalia B IvanovaCenter for Molecular Medicine, University of Georgia, Athens, GA 30602, USA.

Funding

Novel differentiation repressor module in human ES cellsR01GM107092 · NIGMS · YALE UNIVERSITY · PI IVANOVA, NATALIA B · 2014 to 2022
$2.6M
Metabolic control of human endothelial development via the COUP-TF/1-deoxysphingosine axisR01HL173931 · NHLBI · UNIVERSITY OF GEORGIA · PI Natalia B Ivanova · 2024 to 2026
$1.7M
NHLBI NIH HHS R01 HL173931NIGMS NIH HHS R01 GM107092NIH HHS R01HL173931
6 · The paper itself

Abstract

Nuclear hormone receptors (NHRs) are a family of ligand-regulated transcription factors that control key aspects of development and physiology. The regulation of NHRs by ligands derived from metabolism or diet makes them excellent pharmacological targets, and the mechanistic understanding of how NHRs interact with their ligands to regulate downstream gene networks, along with the identification of ligands for orphan NHRs, could enable innovative approaches for cellular engineering, disease modeling and regenerative medicine. We review recent discoveries in the identification of physiologic ligands for NHRs. We propose new models of ligand-receptor co-evolution, the emergence of hormonal function and models of regulation of NHR specificity and activity via one-ligand and two-ligand models as well as feedback loops. Lastly, we discuss limitations on the processes for the identification of physiologic NHR ligands and emerging new methodologies that could be used to identify the natural ligands for the remaining 17 orphan NHRs in the human genome.

Indexed as

MetabolomeReceptors, Cytoplasmic and NuclearAnimalsHumansLigandsLigandsReceptors, Cytoplasmic and Nuclearevolutionhormonesligandsmetabolitesnuclear receptorregulation

Identifiers

PMID39120315
PMCPMC11311682

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.