Evidence map›Paper›PMID 39120137›Full record

ArticlemBio2024

High-throughput genetics enables identification of nutrient utilization and accessory energy metabolism genes in a model methanogen.

Leslie A Day, Hans K Carlson, Dallas R Fonseca, Adam P Arkin, Morgan N Price, Adam M Deutschbauer, Kyle C Costa

Abstract read
In one paragraph

Article in mBio, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Leslie A DayDepartment of Plant and Microbial Biology, University of Minnesota, St. Paul, Minnesota, USA.ORCID 0000-0002-6330-3434
Hans K CarlsonEnvironmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Dallas R FonsecaDepartment of Plant and Microbial Biology, University of Minnesota, St. Paul, Minnesota, USA.
Adam P ArkinEnvironmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Morgan N PriceEnvironmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA.ORCID 0000-0002-4251-0362
Adam M DeutschbauerEnvironmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA.ORCID 0000-0003-2728-7622
Kyle C CostaDepartment of Plant and Microbial Biology, University of Minnesota, St. Paul, Minnesota, USA.ORCID 0000-0003-0407-1431

Funding

U.S. Department of Energy (DOE) DE-AC02-05CH11231U.S. Department of Energy (DOE) DE-SC0014664U.S. Department of Energy (DOE) DE-SC0019148
6 · The paper itself

Abstract

Archaea are widespread in the environment and play fundamental roles in diverse ecosystems; however, characterization of their unique biology requires advanced tools. This is particularly challenging when characterizing gene function. Here, we generate randomly barcoded transposon libraries in the model methanogenic archaeon

Indexed as

Energy MetabolismMethanococcusArchaeal ProteinsDNA Transposable ElementsHigh-Throughput Screening AssaysNitrogenNutrientsArchaeal ProteinsDNA Transposable ElementsNitrogenNutrientsarchaeametabolismtransposons

Identifiers

PMID39120137
PMCPMC11389366

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.