Evidence map›Paper›PMID 39119921›Full record

ArticleNucleic acids research2024

Transposition with Tn3-family elements occurs through interaction with the host β-sliding clamp processivity factor.

Yu Tang, Jianfeng Zhang, Jiahao Guan, Wei Liang, Michael T Petassi, Yumeng Zhang, Xiaofei Jiang, Minggui Wang, Wenjuan Wu, Hong-Yu Ou and 1 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Progresses of transposon research inSynthetic and systems biotechnology · 2026
    Review
  2. Article
  3. Phage Mu enlists the β-sliding clamp for late gene transcription.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. Article
  5. Review
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Yu TangDepartment of Laboratory Medicine, Shanghai East Hospital, Tongji University School of Medicine, Shanghai 200123, China.
Jianfeng ZhangInstitute of Antibiotics, Huashan Hospital, Fudan University, Shanghai 200040, China.ORCID 0000-0003-2909-7064
Jiahao GuanState Key Laboratory of Microbial Metabolism, Joint International Laboratory on Metabolic & Developmental Sciences, School of Life Sciences & Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China.
Wei LiangDepartment of Laboratory Medicine, The First Affiliated Hospital of Ningbo University, Ningbo 315010, China.ORCID 0000-0002-6084-7874
Michael T PetassiDepartment of Microbiology, Cornell University, Ithaca, NY 14853, USA.
Yumeng ZhangState Key Laboratory of Microbial Metabolism, Joint International Laboratory on Metabolic & Developmental Sciences, School of Life Sciences & Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China.ORCID 0000-0002-6444-292X
Xiaofei JiangDepartment of Laboratory Medicine, Huashan Hospital, Shanghai Medical College, Fudan University, Shanghai 200040, China.
Minggui WangInstitute of Antibiotics, Huashan Hospital, Fudan University, Shanghai 200040, China.ORCID 0000-0001-7682-5859
Wenjuan WuDepartment of Laboratory Medicine, Shanghai East Hospital, Tongji University School of Medicine, Shanghai 200123, China.
Hong-Yu OuState Key Laboratory of Microbial Metabolism, Joint International Laboratory on Metabolic & Developmental Sciences, School of Life Sciences & Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China.ORCID 0000-0001-9439-1660
Joseph E PetersDepartment of Microbiology, Cornell University, Ithaca, NY 14853, USA.ORCID 0000-0001-8309-3297

Funding

CRISPR/Cas-directed transposition in Tn7-like elementsR01GM129118 · NIGMS · CORNELL UNIVERSITY · PI PETERS, JOSEPH E · 2019 to 2022
$1.2M
CRISPR-Cas-directed transposition in Tn7-like elementsR35GM152260 · NIGMS · CORNELL UNIVERSITY · PI Joseph E Peters · 2024 to 2026
$1.1M
National Natural Science Foundation of China 82002171NIGMS NIH HHS R01 GM129118NIGMS NIH HHS R35 GM152260NIH HHS R01 GM129118Shanghai Sailing Program 20YF1444400
6 · The paper itself

Abstract

Tn3 family transposons are a widespread group of replicative transposons, notorious for contributing to the dissemination of antibiotic resistance, particularly the global prevalence of carbapenem resistance. The transposase (TnpA) of these elements catalyzes DNA breakage and rejoining reactions required for transposition. However, the molecular mechanism for target site selection with these elements remains unclear. Here, we identify a QLxxLR motif in N-terminal of Tn3 TnpAs and demonstrate that this motif allows interaction between TnpA of Tn3 family transposon Tn1721 and the host β-sliding clamp (DnaN), the major processivity factor of the DNA replication machinery. The TnpA-DnaN interaction is essential for Tn1721 transposition. Our work unveils a mechanism whereby Tn3 family transposons can bias transposition into certain replisomes through an interaction with the host replication machinery. This study further expands the diversity of mobile elements that use interaction with the host replication machinery to bias integration.

Indexed as

DNA ReplicationDNA Transposable ElementsTransposasesAmino Acid MotifsDNA Polymerase IIIEscherichia coliEscherichia coli ProteinsProtein BindingDNA Polymerase IIIDNA Transposable ElementsEscherichia coli ProteinsTransposases

Identifiers

PMID39119921
PMCPMC11417375

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.