Evidence map›Paper›PMID 39119210›Full record

ArticlePHAGE (New Rochelle, N.Y.)2024

Structural and Biochemical Characterization of a New Phage-Encoded Muramidase, KTN6 Gp46.

Marta Sanz-Gaitero, Vincent De Maesschalck, Ankur Patel, Hannelore Longin, Vera Van Noort, Lorena Rodriguez-Rubio, Michael van Ryne, Katarzyna Danis-Wlodarczyk, Zuzanna Drulis-Kawa, Stephane Mesnage and 2 more

Abstract read
In one paragraph

Article in PHAGE (New Rochelle, N.Y.), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. New BacteriophageViruses · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Marta Sanz-GaiteroCentro Nacional de Biotecnologia, Consejo Superior de Investigaciones Cientificas, Madrid, Spain.
Vincent De MaesschalckLaboratory of Gene Technology, KU Leuven, Leuven, Belgium.ORCID https://orcid.org/0000-0001-5400-6166
Ankur PatelSchool of Biosciences, University of Sheffield, Sheffield, United Kingdom.
Hannelore LonginLaboratory of Gene Technology, KU Leuven, Leuven, Belgium.ORCID https://orcid.org/0000-0001-8524-5768
Vera Van NoortLaboratory of Computational Systems Biology, KU Leuven, Leuven, Belgium.
Lorena Rodriguez-RubioLaboratory of Gene Technology, KU Leuven, Leuven, Belgium.
Michael van RyneLaboratory of Gene Technology, KU Leuven, Leuven, Belgium.
Katarzyna Danis-WlodarczykLaboratory of Gene Technology, KU Leuven, Leuven, Belgium.
Zuzanna Drulis-KawaDepartment of Pathogen Biology and Immunology, University of Wroclaw, Wroclaw, Poland.
Stephane MesnageSchool of Biosciences, University of Sheffield, Sheffield, United Kingdom.
Mark van RaaijCentro Nacional de Biotecnologia, Consejo Superior de Investigaciones Cientificas, Madrid, Spain.
Rob LavigneLaboratory of Gene Technology, KU Leuven, Leuven, Belgium.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Endolysins are phage-encoded lytic enzymes that degrade bacterial peptidoglycan at the end of phage lytic cycles to release new phage particles. These enzymes are being explored as an alternative to small-molecule antibiotics. Methods: The crystal structure of KTN6 Gp46 was determined and compared with a ColabFold model. Cleavage specificity was examined using a peptidoglycan digest and reversed-phase high-performance liquid chromatography coupled to mass spectrometry (HPLC/MS). Results: The structure of KTN6 Gp46 could be determined at 1.4 Å resolution, and key differences in loops of the putative peptidoglycan binding domain were identified in comparison with its closest known homologue, the endolysin of phage SPN1S. Reversed-phase HPLC/MS analysis of the reaction products following peptidoglycan digestion confirmed the muramidase activity of Gp46, consistent with structural predictions. Conclusion: These insights into the structure and function of endolysins further expand the toolbox for endolysin engineering and explore their potential in enzyme-based antibacterial design strategies.

Indexed as

antibacterialbacteriophageendolysinmuramidasepeptidoglycan hydrolase

Identifiers

PMID39119210
PMCPMC11304755

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.