Evidence map›Paper›PMID 39118291›Full record

ArticleFEBS open bio2024

Periplasmic binding proteins Bug69 and Bug27 from Bordetella pertussis are in vitro high-affinity quinolinate binders with a potential role in NAD biosynthesis.

Leonardo Sorci, Gabriele Minazzato, Adolfo Amici, Francesca Mazzola, Nadia Raffaelli

Abstract read
In one paragraph

Article in FEBS open bio, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Leonardo SorciDivision of Bioinformatics and Biochemistry, Department of Science and Engineering of Matter, Environment and Urban Planning, Polytechnic University of Marche, Ancona, Italy.ORCID https://orcid.org/0000-0002-4356-8873
Gabriele MinazzatoDepartment of Agricultural, Food and Environmental Sciences, Polytechnic University of Marche, Ancona, Italy.
Adolfo AmiciDepartment of Clinical Sciences, Polytechnic University of Marche, Ancona, Italy.
Francesca MazzolaDepartment of Clinical Sciences, Polytechnic University of Marche, Ancona, Italy.ORCID https://orcid.org/0000-0001-9140-012X
Nadia RaffaelliDepartment of Agricultural, Food and Environmental Sciences, Polytechnic University of Marche, Ancona, Italy.

Funding

Marche Polytechnic University RSA2021-22
6 · The paper itself

Abstract

Bordetella's genome contains a large family of periplasmic binding proteins (PBPs) known as Bugs, whose functions are mainly unassigned. Two members, Bug27 and Bug69, have previously been considered potential candidates for the uptake of small pyridine precursors, possibly linked to NAD biosynthesis. Here, we show an in vitro affinity of Bug27 and Bug69 for quinolinate in the submicromolar range, with a marked preference over other NAD precursors. A combined sequence similarity network and genome context analysis identifies a cluster of Bug69/27 homologs that are genomically associated with the NAD transcriptional regulator NadQ and the enzyme quinolinate phosphoribosyltransferase (QaPRT, gene nadC), suggesting a functional linkage to NAD metabolism. Integrating molecular docking and structure-based multiple alignments confirms that quinolinate is the preferred ligand for Bug27 and Bug69.

Indexed as

Bacterial ProteinsBordetella pertussisMolecular Docking SimulationNADPeriplasmic Binding ProteinsPentosyltransferasesBacterial ProteinsNADPentosyltransferasesPeriplasmic Binding ProteinsBordetella Uptake Genemolecular dockingNAD biosynthesisperiplasmic binding proteinquinolinate phosphoribosyltransferasesequence similarity network

Identifiers

PMID39118291
PMCPMC11452294

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.