Evidence map›Paper›PMID 39118049›Full record

Observational studyReproductive biology and endocrinology : RB&E2024

Factors affecting biochemical pregnancy loss (BPL) in preimplantation genetic testing for aneuploidy (PGT-A) cycles: machine learning-assisted identification.

José A Ortiz, B Lledó, R Morales, A Máñez-Grau, A Cascales, A Rodríguez-Arnedo, Juan C Castillo, A Bernabeu, R Bernabeu

Abstract readObservational Study
In one paragraph

Observational study in Reproductive biology and endocrinology : RB&E, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

José A OrtizInstituto Bernabeu, Molecular Biology Department, Alicante, Spain. jaortiz@institutobernabeu.com.ORCID https://orcid.org/0000-0003-0505-3032
B LledóInstituto Bernabeu, Molecular Biology Department, Alicante, Spain.
R MoralesInstituto Bernabeu, Molecular Biology Department, Alicante, Spain.
A Máñez-GrauInstituto Bernabeu, Reproductive Biology, Alicante, Spain.
A CascalesInstituto Bernabeu, Molecular Biology Department, Alicante, Spain.
A Rodríguez-ArnedoInstituto Bernabeu, Reproductive Biology, Alicante, Spain.
Juan C CastilloInstituto Bernabeu, Reproductive Medicine, Alicante, Spain.
A BernabeuInstituto Bernabeu, Reproductive Medicine, Alicante, Spain.
R BernabeuInstituto Bernabeu, Reproductive Medicine, Alicante, Spain.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeTo determine the factors influencing the likelihood of biochemical pregnancy loss (BPL) after transfer of a euploid embryo from preimplantation genetic testing for aneuploidy (PGT-A) cycles.

methodsThe study employed an observational, retrospective cohort design, encompassing 6020 embryos from 2879 PGT-A cycles conducted between February 2013 and September 2021. Trophectoderm biopsies in day 5 (D5) or day 6 (D6) blastocysts were analyzed by next generation sequencing (NGS). Only single embryo transfers (SET) were considered, totaling 1161 transfers. Of these, 49.9% resulted in positive pregnancy tests, with 18.3% experiencing BPL. To establish a predictive model for BPL, both classical statistical methods and five different supervised classification machine learning algorithms were used. A total of forty-seven factors were incorporated as predictor variables in the machine learning models.

resultsThroughout the optimization process for each model, various performance metrics were computed. Random Forest model emerged as the best model, boasting the highest area under the ROC curve (AUC) value of 0.913, alongside an accuracy of 0.830, positive predictive value of 0.857, and negative predictive value of 0.807. For the selected model, SHAP (SHapley Additive exPlanations) values were determined for each of the variables to establish which had the best predictive ability. Notably, variables pertaining to embryo biopsy demonstrated the greatest predictive capacity, followed by factors associated with ovarian stimulation (COS), maternal age, and paternal age.

conclusionsThe Random Forest model had a higher predictive power for identifying BPL occurrences in PGT-A cycles. Specifically, variables associated with the embryo biopsy procedure (biopsy day, number of biopsied embryos, and number of biopsied cells) and ovarian stimulation (number of oocytes retrieved and duration of stimulation), exhibited the strongest predictive power.

Indexed as

Abortion, SpontaneousAneuploidyGenetic TestingMachine LearningPreimplantation DiagnosisAdultBlastocystEmbryo TransferFemaleHumansPregnancyRetrospective StudiesArtificial intelligence (AI)Biochemical pregnancy loss (BPL)Machine learningNGSPGT-ASHAP value

Identifiers

PMID39118049
PMCPMC11308629

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.