Evidence map›Paper›PMID 39117673›Full record

ArticleNature communications2024

Global diversity and ecological functions of viruses inhabiting oil reservoirs.

Liyun An, Xinwu Liu, Jianwei Wang, Jinbo Xu, Xiaoli Chen, Xiaonan Liu, Bingxin Hu, Yong Nie, Xiao-Lei Wu

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Liyun AnCollege of architecture and environment, Sichuan University, Chengdu, 610065, China.
Xinwu LiuCollege of Engineering, Peking University, Beijing, 100871, China.
Jianwei WangCollege of Engineering, Peking University, Beijing, 100871, China.
Jinbo XuSchool of Earth and Space Sciences, Peking University, Beijing, 100871, China.
Xiaoli ChenCollege of Engineering, Peking University, Beijing, 100871, China.
Xiaonan LiuCollege of Engineering, Peking University, Beijing, 100871, China.
Bingxin HuCollege of Engineering, Peking University, Beijing, 100871, China.
Yong NieCollege of Engineering, Peking University, Beijing, 100871, China. nieyong@pku.edu.cn.ORCID 0000-0002-5940-1218
Xiao-Lei WuCollege of architecture and environment, Sichuan University, Chengdu, 610065, China. xiaolei_wu@pku.edu.cn.ORCID 0000-0002-9897-6903

Funding

National Natural Science Foundation of China (National Science Foundation of China) 32130004National Natural Science Foundation of China (National Science Foundation of China) 32161133023National Natural Science Foundation of China (National Science Foundation of China) 32170113National Natural Science Foundation of China (National Science Foundation of China) 91951204
6 · The paper itself

Abstract

Oil reservoirs, being one of the significant subsurface repositories of energy and carbon, host diverse microbial communities affecting energy production and carbon emissions. Viruses play crucial roles in the ecology of microbiomes, however, their distribution and ecological significance in oil reservoirs remain undetermined. Here, we assemble a catalogue encompassing viral and prokaryotic genomes sourced from oil reservoirs. The catalogue comprises 7229 prokaryotic genomes and 3,886 viral Operational Taxonomic Units (vOTUs) from 182 oil reservoir metagenomes. The results show that viruses are widely distributed in oil reservoirs, and 85% vOTUs in oil reservoir are detected in less than 10% of the samples, highlighting the heterogeneous nature of viral communities within oil reservoirs. Through combined microcosm enrichment experiments and bioinformatics analysis, we validate the ecological roles of viruses in regulating the community structure of sulfate reducing microorganisms, primarily through a virulent lifestyle. Taken together, this study uncovers a rich diversity of viruses and their ecological functions within oil reservoirs, offering a comprehensive understanding of the role of viral communities in the biogeochemical cycles of the deep biosphere.

Indexed as

BiodiversityMetagenomeOil and Gas FieldsVirusesBacteriaGenome, ViralMetagenomicsMicrobiotaPhylogeny

Identifiers

PMID39117673
PMCPMC11310422

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.