Evidence map›Paper›PMID 39115489›Full record

ArticleThe Journal of heart and lung transplantation : the official publication of the International Society for Heart Transplantation2024

Small airway brush gene expression predicts chronic lung allograft dysfunction and mortality.

Rashmi Prava Mohanty, Kaveh Moghbeli, Jonathan P Singer, Daniel R Calabrese, Steven R Hays, Carlo Iasella, Sophia Lieber, Lorriana E Leard, Rupal J Shah, Aida Venado and 8 more

Abstract read
In one paragraph

Article in The Journal of heart and lung transplantation : the official publication of the International Society for Heart Transplantation, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Utility of donor-derived cell-free DNA testing after lung transplantation in the precision medicine era.The Journal of heart and lung transplantation : the official publication of the International Society for Heart Transplantation · 2026
    Review
  2. Airway molecular signatures in antibody-mediated lung transplant rejection.American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons · 2026
    Article
  3. Immune gene correlation networks differentiate both chronic lung allograft dysfunction and survival.American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons · 2026
    Article
  4. Acute lung allograft dysfunction predicts lung allograft failure: Construct validity of the 2026 International Society for Heart and Lung Transplantation spirometric definition.The Journal of heart and lung transplantation : the official publication of the International Society for Heart Transplantation · 2026
    Observational
  5. Post-lung transplant surveillance in 2026: current practice, variability, and the need for standardization.Transplant international : official journal of the European Society for Organ Transplantation · 2026
    Review
  6. Article
  7. Article
  8. Persistent and progressive acute lung allograft dysfunction is linked to cell compositional and transcriptional changes in small airways.The Journal of heart and lung transplantation : the official publication of the International Society for Heart Transplantation · 2025
    Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Rashmi Prava MohantyDepartment of Medicine, University of California, San Francisco, California; Medical Service, Veterans Affairs Health Care System, San Francisco, California.
Kaveh MoghbeliDepartment of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania.
Jonathan P SingerDepartment of Medicine, University of California, San Francisco, California.
Daniel R CalabreseDepartment of Medicine, University of California, San Francisco, California; Medical Service, Veterans Affairs Health Care System, San Francisco, California.
Steven R HaysDepartment of Medicine, University of California, San Francisco, California.
Carlo IasellaDepartment of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania.
Sophia LieberDepartment of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania.
Lorriana E LeardDepartment of Medicine, University of California, San Francisco, California.
Rupal J ShahDepartment of Medicine, University of California, San Francisco, California.
Aida VenadoDepartment of Medicine, University of California, San Francisco, California.
Mary E KleinhenzDepartment of Medicine, University of California, San Francisco, California.
Jeffery A GoldenDepartment of Medicine, University of California, San Francisco, California.
Tereza MartinuToronto Lung Transplant Program, Ajmera Transplant Center, University Health Network, Toronto, Ontario, Canada.
Christina LoveDepartment of Medicine, University of California, San Francisco, California.
Ryan WardDepartment of Medicine, University of California, San Francisco, California.
Charles R LangelierChan Zuckerberg Biohub, San Francisco, California.
John McDyerDepartment of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania.
John R GreenlandDepartment of Medicine, University of California, San Francisco, California; Medical Service, Veterans Affairs Health Care System, San Francisco, California. Electronic address: john.greenland@ucsf.edu.

Funding

Long Term Follow up of the Lung Transplant Outcomes Group CohortU01HL145435 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI CHRISTIE, JASON D, PALMER, SCOTT M · 2019 to 2025
$10.2M
Frailty and patient centered outcomes in candidates for lung transplantationR01HL134851 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SINGER, JONATHAN PAUL · 2017 to 2021
$3.4M
Airway epithelial cell and lymphocyte interactions in chronic lung allograft dysfunction pathogenesisR01HL161048 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI JOHN GREENLAND, TEREZA MARTINU · 2022 to 2026
$3.3M
Cytomegalovirus Immune Responses in Chronic Lung Allograft Dysfunction PathogenesisI01CX002011 · VA · VETERANS AFFAIRS MED CTR SAN FRANCISCO · PI GREENLAND, JOHN · 2020 to 2025
–
CSRD VA I01 CX002011NHLBI NIH HHS R01 HL134851NHLBI NIH HHS R01 HL161048NHLBI NIH HHS U01 HL145435
6 · The paper itself

Abstract

backgroundChronic lung allograft dysfunction (CLAD) limits survival following lung transplant, but substantial lung damage occurs before diagnosis by traditional methods. We hypothesized that small airway gene expression patterns could identify CLAD risk before spirometric diagnosis and predict subsequent graft failure.

methodsCandidate genes from 4 rejection-associated transcript sets were assessed for associations with CLAD or graft failure in a derivation cohort of 156 small airway brushes from 45 CLAD cases and 37 time-matched controls with >1-year stable lung function. Candidate genes not associated with CLAD and time to graft failure were excluded, yielding the Airway Inflammation 2 (AI2) gene set. Area under the receiver operating curve (AUC) for CLAD and competing risks of death or graft failure were assessed in an independent validation cohort of 37 CLAD cases and 37 controls.

resultsThirty-two candidate genes were associated with CLAD and graft failure, comprising the AI2 score, which clustered into 3 subcomponents. The AI2 score identified CLAD before its onset, in early and late post-CLAD brushes, as well as in the validation cohort (AUC 0.69-0.88). The AI2 score association with CLAD was independent of positive microbiology, CLAD stage, or CLAD subtype. However, transcripts most associated with CLAD evolved over time from CLAD onset. The AI2 score predicted time to graft failure and retransplant-free survival in both cohorts (p ≤ 0.03).

conclusionsThis airway inflammation gene score is associated with CLAD development, graft failure, and death. Future studies defining the molecular heterogeneity of airway inflammation could lead to endotype-targeted therapies.

Indexed as

AllograftsLung TransplantationAdultChronic DiseaseFemaleGraft RejectionHumansLungMaleMiddle AgedPredictive Value of TestsPrimary Graft DysfunctionRetrospective Studiesbiomarkerchronic lung allograft dysfunctiongene expressionlung transplantmolecular diagnostictranscriptome

Identifiers

PMID39115489
PMCPMC12208505

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.