Evidence map›Paper›PMID 39114311›Full record

ArticleFrontiers in oncology2024

Based on machine learning, CDC20 has been identified as a biomarker for postoperative recurrence and progression in stage I & II lung adenocarcinoma patients.

Rui Miao, Zhi Xu, Tao Han, Yafeng Liu, Jiawei Zhou, Jianqiang Guo, Yingru Xing, Ying Bai, Zhonglei He, Jing Wu and 2 more

Abstract read
In one paragraph

Article in Frontiers in oncology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Rui Miao *School of Medicine, Anhui University of Science and Technology, Huainan, China.
Zhi Xu *School of Medicine, Anhui University of Science and Technology, Huainan, China.
Tao Han *School of Medicine, Anhui University of Science and Technology, Huainan, China.
Yafeng LiuSchool of Medicine, Anhui University of Science and Technology, Huainan, China.
Jiawei ZhouSchool of Medicine, Anhui University of Science and Technology, Huainan, China.
Jianqiang GuoSchool of Medicine, Anhui University of Science and Technology, Huainan, China.
Yingru XingSchool of Medicine, Anhui University of Science and Technology, Huainan, China.
Ying BaiSchool of Medicine, Anhui University of Science and Technology, Huainan, China.
Zhonglei HeInstitute of Precision Medicine (AUST-IPM), Anhui University of Science and Technology, Huainan, China.
Jing WuSchool of Medicine, Anhui University of Science and Technology, Huainan, China.
Wenxin WangInstitute of Precision Medicine (AUST-IPM), Anhui University of Science and Technology, Huainan, China.
Dong HuSchool of Medicine, Anhui University of Science and Technology, Huainan, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Objective: By utilizing machine learning, we can identify genes that are associated with recurrence, invasion, and tumor stemness, thus uncovering new therapeutic targets. Methods: To begin, we obtained a gene set related to recurrence and invasion from the GEO database, a comprehensive gene expression database. We then employed the Weighted Gene Co-expression Network Analysis (WGCNA) to identify core gene modules and perform functional enrichment analysis on them. Next, we utilized the random forest and random survival forest algorithms to calculate the genes within the key modules, resulting in the identification of three crucial genes. Subsequently, one of these key genes was selected for prognosis analysis and potential drug screening using the Kaplan-Meier tool. Finally, in order to examine the role of CDC20 in lung adenocarcinoma (LUAD), we conducted a variety of Results: First, we collected a total of 279 samples from two datasets, GSE166722 and GSE31210, to identify 91 differentially expressed genes associated with recurrence, invasion, and stemness in lung adenocarcinoma. Functional enrichment analysis revealed that these key gene clusters were primarily involved in microtubule binding, spindle, chromosomal region, organelle fission, and nuclear division. Next, using machine learning, we identified and validated three hub genes (CDC45, CDC20, TPX2), with CDC20 showing the highest correlation with tumor stemness and limited previous research. Furthermore, we found a close association between CDC20 and clinical pathological features, poor overall survival (OS), progression-free interval (PFI), progression-free survival (PFS), and adverse prognosis in lung adenocarcinoma patients. Lastly, our functional research demonstrated that knocking down CDC20 could inhibit cancer cell migration, invasion, proliferation, cell cycle progression, and tumor growth possibly through the MAPK signaling pathway. Conclusion: CDC20 has emerged as a novel biomarker for monitoring treatment response, recurrence, and disease progression in patients with lung adenocarcinoma. Due to its significance, further research studying CDC20 as a potential therapeutic target is warranted. Investigating the role of CDC20 could lead to valuable insights for developing new treatments and improving patient outcomes.

Indexed as

CDC20invasionlung adenocarcinomamachine learningrecurrence

Identifiers

PMID39114311
PMCPMC11303833

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.