Evidence map›Paper›PMID 39112488›Full record

ArticleNature communications2024

Multi-omic analysis of Huntington's disease reveals a compensatory astrocyte state.

Fahad Paryani, Ji-Sun Kwon, Christopher W Ng, Kelly Jakubiak, Nacoya Madden, Kenneth Ofori, Alice Tang, Hong Lu, Shengnan Xia, Juncheng Li and 12 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed.

  1. Virulence · 2026
    Article
  2. Chemically modified CRISPR enzymes for multi-organ genome editingbioRxiv : the preprint server for biology · 2026
    Article
  3. Review
  4. Review
  5. Article
  6. Review
  7. Towards AI-driven prediction ofJournal of Huntington's disease · 2026
    Article
  8. Metallothionein and neurodegenerative diseases.Neural regeneration research · 2026
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Review
  16. Decoding neurodegeneration one cell at a time.The Journal of clinical investigation · 2026
    Review
  17. Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

22 authors.

Fahad ParyaniDepartment of Neurology, Columbia University Irving Medical Center, New York, NY, USA.
Ji-Sun KwonDepartment of Developmental Biology Washington University School of Medicine in St. Louis, St. Louis, MO, USA.
Christopher W NgMassachusetts Institute of Technology, Department of Biological Engineering, Cambridge, MA, USA.
Kelly JakubiakDepartment of Pathology and Cell Biology, Columbia University Irving Medical Center, New York, NY, USA.ORCID 0009-0002-6932-4460
Nacoya MaddenDepartment of Pathology and Cell Biology, Columbia University Irving Medical Center, New York, NY, USA.
Kenneth OforiDepartment of Pathology and Cell Biology, Columbia University Irving Medical Center, New York, NY, USA.ORCID 0000-0002-4422-2882
Alice TangDepartment of Pathology and Cell Biology, Columbia University Irving Medical Center, New York, NY, USA.
Hong LuDepartment of Pathology and Cell Biology, Columbia University Irving Medical Center, New York, NY, USA.
Shengnan XiaDepartment of Pathology and Cell Biology, Columbia University Irving Medical Center, New York, NY, USA.
Juncheng LiDepartment of Pathology and Cell Biology, Columbia University Irving Medical Center, New York, NY, USA.
Aayushi MahajanDepartment of Pathology and Cell Biology, Columbia University Irving Medical Center, New York, NY, USA.
Shawn M DavidsonNorthwestern Feinberg School of Medicine, Northwestern University, Evanston, IL, USA.ORCID 0000-0002-3475-0382
Anna O BasileNew York Genome Center, New York, NY, USA.ORCID 0000-0001-5112-5880
Caitlin McHughNew York Genome Center, New York, NY, USA.
Jean Paul VonsattelDepartment of Pathology and Cell Biology, Columbia University Irving Medical Center, New York, NY, USA.
Richard HickmanDepartment of Pathology and Cell Biology, Columbia University Irving Medical Center, New York, NY, USA.
Michael C ZodyNew York Genome Center, New York, NY, USA.ORCID 0000-0001-6594-7199
David E HousmanMassachusetts Institute of Technology, Department of Biological Engineering, Cambridge, MA, USA.
James E GoldmanDepartment of Pathology and Cell Biology, Columbia University Irving Medical Center, New York, NY, USA.ORCID 0000-0003-2135-8936
Andrew S YooDepartment of Developmental Biology Washington University School of Medicine in St. Louis, St. Louis, MO, USA.ORCID 0000-0002-0304-3247
Vilas MenonDepartment of Neurology, Columbia University Irving Medical Center, New York, NY, USA. vm2545@cumc.columbia.edu.ORCID 0000-0002-4096-8601
Osama Al-DalahmahDepartment of Pathology and Cell Biology, Columbia University Irving Medical Center, New York, NY, USA. oa2298@cumc.columbia.edu.ORCID 0000-0002-3442-5459

Funding

Research Education CoreP30AG066462 · NIA · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI PHILIP L DE JAGER · 2020 to 2026
$30.1M
Identifying shared and distinct cell type vulnerability across neurological diseases.R21AG075754 · NIA · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI AL DALAHMAH, OSAMA, GOLDMAN, JAMES · 2022 to 2022
$446k
NIA NIH HHS P30 AG066462NIA NIH HHS R21 AG075754U.S. Department of Health & Human Services | NIH | National Institute on Aging (U.S. National Institute on Aging) AG075754
6 · The paper itself

Abstract

The mechanisms underlying the selective regional vulnerability to neurodegeneration in Huntington's disease (HD) have not been fully defined. To explore the role of astrocytes in this phenomenon, we used single-nucleus and bulk RNAseq, lipidomics, HTT gene CAG repeat-length measurements, and multiplexed immunofluorescence on HD and control post-mortem brains. We identified genes that correlated with CAG repeat length, which were enriched in astrocyte genes, and lipidomic signatures that implicated poly-unsaturated fatty acids in sensitizing neurons to cell death. Because astrocytes play essential roles in lipid metabolism, we explored the heterogeneity of astrocytic states in both protoplasmic and fibrous-like (CD44+) astrocytes. Significantly, one protoplasmic astrocyte state showed high levels of metallothioneins and was correlated with the selective vulnerability of distinct striatal neuronal populations. When modeled in vitro, this state improved the viability of HD-patient-derived spiny projection neurons. Our findings uncover key roles of astrocytic states in protecting against neurodegeneration in HD.

Indexed as

AstrocytesHuntington DiseaseNeuronsAgedBrainFemaleHumansHuntingtin ProteinLipid MetabolismLipidomicsMaleMetallothioneinMiddle AgedMultiomicsHTT protein, humanHuntingtin ProteinMetallothionein

Identifiers

PMID39112488
PMCPMC11306246

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.