Evidence map›Paper›PMID 39110763›Full record

ArticleAnalytical chemistry2024

Quantum Chemistry-Based Prediction of Electron Ionization Mass Spectra for Environmental Chemicals.

Helge Hecht, Wudmir Y Rojas, Zargham Ahmad, Aleš Křenek, Jana Klánová, Elliott J Price

Abstract read
In one paragraph

Article in Analytical chemistry, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
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  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Helge HechtRECETOX, Faculty of Science, Masaryk University, Kotlářská 2, Brno 602 00, Czech Republic.ORCID 0000-0001-6744-996X
Wudmir Y RojasRECETOX, Faculty of Science, Masaryk University, Kotlářská 2, Brno 602 00, Czech Republic.
Zargham AhmadRECETOX, Faculty of Science, Masaryk University, Kotlářská 2, Brno 602 00, Czech Republic.
Aleš KřenekInstitute of Computer Science, Masaryk University, Botanická 554/68a, Brno 602 00, Czech Republic.
Jana KlánováRECETOX, Faculty of Science, Masaryk University, Kotlářská 2, Brno 602 00, Czech Republic.
Elliott J PriceRECETOX, Faculty of Science, Masaryk University, Kotlářská 2, Brno 602 00, Czech Republic.ORCID 0000-0001-5691-7000

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

There is a lack of experimental electron ionization high-resolution mass spectra available to assist compound identification. The in silico generation of mass spectra by quantum chemistry can aid annotation workflows, in particular to support the identification of compounds that lack experimental reference spectra, such as environmental chemicals. We present an open-source, semiautomated workflow for the in silico prediction of electron ionization high-resolution mass spectra at 70 eV based on the QCxMS software. The workflow was applied to predict the spectra of 367 environmental chemicals, and the accuracy was evaluated by comparison to experimental reference spectra acquired. The molecular flexibility, number of rotatable bonds, and number of electronegative atoms of a compound were negatively correlated with prediction accuracy. Few analytes are predicted to sufficient accuracy for the direct application of predicted spectra in spectral matching workflows (overall average score 428). The

Identifiers

PMID39110763
PMCPMC11339729

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.