Evidence map›Paper›PMID 39109339›Full record

ArticleJournal of big data2024

Interpolation-split: a data-centric deep learning approach with big interpolated data to boost airway segmentation performance.

Wing Keung Cheung, Ashkan Pakzad, Nesrin Mogulkoc, Sarah Helen Needleman, Bojidar Rangelov, Eyjolfur Gudmundsson, An Zhao, Mariam Abbas, Davina McLaverty, Dimitrios Asimakopoulos and 7 more

Abstract read
In one paragraph

Article in Journal of big data, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. MJournal of imaging · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Wing Keung CheungSatsuma Lab, Centre for Medical Image Computing, University College London, 1st Floor, 90 High Holborn, London, WC1V6LJ UK.
Ashkan PakzadSatsuma Lab, Centre for Medical Image Computing, University College London, 1st Floor, 90 High Holborn, London, WC1V6LJ UK.
Nesrin MogulkocDepartment of Respiratory Medicine, Ege University Hospital, Izmir, Turkey.
Sarah Helen NeedlemanSatsuma Lab, Centre for Medical Image Computing, University College London, 1st Floor, 90 High Holborn, London, WC1V6LJ UK.
Bojidar RangelovSatsuma Lab, Centre for Medical Image Computing, University College London, 1st Floor, 90 High Holborn, London, WC1V6LJ UK.
Eyjolfur GudmundssonSatsuma Lab, Centre for Medical Image Computing, University College London, 1st Floor, 90 High Holborn, London, WC1V6LJ UK.
An ZhaoSatsuma Lab, Centre for Medical Image Computing, University College London, 1st Floor, 90 High Holborn, London, WC1V6LJ UK.
Mariam AbbasDepartment of Computer Science, University College London, London, UK.
Davina McLavertyMedical School, University College London, London, UK.
Dimitrios AsimakopoulosSchool of Clinical Medicine, University of Cambridge, Cambridge, UK.
Robert ChapmanInterstitial Lung Disease Service, Department of Respiratory Medicine, University College London Hospitals NHS Foundation Trust, London, UK.
Recep SavasDepartment of Radiology, Ege University Hospital, Izmir, Turkey.
Sam M JanesLungs for Living Research Centre, UCL, London, UK.
Yipeng HuSatsuma Lab, Centre for Medical Image Computing, University College London, 1st Floor, 90 High Holborn, London, WC1V6LJ UK.
Daniel C AlexanderSatsuma Lab, Centre for Medical Image Computing, University College London, 1st Floor, 90 High Holborn, London, WC1V6LJ UK.
John R HurstUCL Respiratory, University College London, London, UK.
Joseph JacobSatsuma Lab, Centre for Medical Image Computing, University College London, 1st Floor, 90 High Holborn, London, WC1V6LJ UK.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The morphology and distribution of airway tree abnormalities enable diagnosis and disease characterisation across a variety of chronic respiratory conditions. In this regard, airway segmentation plays a critical role in the production of the outline of the entire airway tree to enable estimation of disease extent and severity. Furthermore, the segmentation of a complete airway tree is challenging as the intensity, scale/size and shape of airway segments and their walls change across generations. The existing classical techniques either provide an undersegmented or oversegmented airway tree, and manual intervention is required for optimal airway tree segmentation. The recent development of deep learning methods provides a fully automatic way of segmenting airway trees; however, these methods usually require high GPU memory usage and are difficult to implement in low computational resource environments. Therefore, in this study, we propose a data-centric deep learning technique with big interpolated data, Interpolation-Split, to boost the segmentation performance of the airway tree. The proposed technique utilises interpolation and image split to improve data usefulness and quality. Then, an ensemble learning strategy is implemented to aggregate the segmented airway segments at different scales. In terms of average segmentation performance (dice similarity coefficient, DSC), our method (A) achieves 90.55%, 89.52%, and 85.80%; (B) outperforms the baseline models by 2.89%, 3.86%, and 3.87% on average; and (C) produces maximum segmentation performance gain by 14.11%, 9.28%, and 12.70% for individual cases when (1) nnU-Net with instant normalisation and leaky ReLU; (2) nnU-Net with batch normalisation and ReLU; and (3) modified dilated U-Net are used respectively. Our proposed method outperformed the state-of-the-art airway segmentation approaches. Furthermore, our proposed technique has low RAM and GPU memory usage, and it is GPU memory-efficient and highly flexible, enabling it to be deployed on any 2D deep learning model.

Identifiers

PMID39109339
PMCPMC11298507

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.