Evidence map›Paper›PMID 39108301›Full record

ArticlePNAS nexus2024

Spatial immunophenotyping using multiplexed imaging of immune follicles in secondary lymphoid tissues.

Mayar Allam, Thomas Hu, Zhou Fang, Michelle Pi, Ankur Singh, Ahmet F Coskun

Abstract read
In one paragraph

Article in PNAS nexus, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Emerging technologies in the spatial proteomics landscape.Analytical and bioanalytical chemistry · 2026
    Review
  2. Lymphoid-Tissue-on-Chip Recapitulates Human Antibody Responses In Vitro.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Mayar AllamWallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, GA 30332, USA.ORCID https://orcid.org/0000-0002-1550-2316
Thomas HuWallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, GA 30332, USA.
Zhou FangWallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, GA 30332, USA.
Michelle PiSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, GA 30332, USA.ORCID https://orcid.org/0009-0007-9913-0241
Ankur SinghWallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, GA 30332, USA.ORCID https://orcid.org/0000-0002-3501-2277
Ahmet F CoskunWallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, GA 30332, USA.ORCID https://orcid.org/0000-0002-5797-1524

Funding

Hydrogel-based Organoids of African-American Lymphomas to Study B Cell Receptor Pathway InhibitorsR01CA266052 · NCI · GEORGIA INSTITUTE OF TECHNOLOGY · PI JEAN L KOFF, Ankur Singh · 2022 to 2026
$2.7M
Biomaterials-based Germinal Center Niches for Understanding the B Cell Maturation and B cell receptor signalingR01AI132738 · NIAID · GEORGIA INSTITUTE OF TECHNOLOGY · PI SINGH, ANKUR · 2018 to 2022
$1.9M
Dissecting subcellular and cellular organization by spatial molecular neighborhood networksR35GM151028 · NIGMS · GEORGIA INSTITUTE OF TECHNOLOGY · PI Ahmet F. Coskun · 2023 to 2026
$1.5M
Decoding Spatially Resolved Single Cell Metabolic Trajectory of Tonsil Tissues and OrganoidsR21AI173900 · NIAID · GEORGIA INSTITUTE OF TECHNOLOGY · PI COSKUN, AHMET F., SINGH, ANKUR · 2023 to 2024
$433k
Tissue systems biology of immune dysregulation in aging by single cell spatial metabolomicsR21AG081715 · NIA · GEORGIA INSTITUTE OF TECHNOLOGY · PI COSKUN, AHMET F. · 2023 to 2024
$391k
NCI NIH HHS R01 CA266052NIAID NIH HHS R01 AI132738NIAID NIH HHS R21 AI173900NIA NIH HHS R21 AG081715NIGMS NIH HHS R35 GM151028Wellcome Trust
6 · The paper itself

Abstract

Secondary lymphoid organs (SLOs), including tonsils (TS), lymph nodes (LN), and Peyer's Patches, exhibit complementary immune functions. However, little is known about the spatial organization of immune cells and extracellular matrix (ECM) in the SLOs. Traditional imaging is limited to a few markers, confining our understanding of the differences between the SLOs. Herein, imaging mass cytometry addressed this gap by simultaneously profiling 25-plex proteins in SLO tissues at subcellular resolution. The antibody panel targeted immune, stromal, chemokine, epigenetic, and functional markers. For robust cell identification, a computational workflow

Identifiers

PMID39108301
PMCPMC11299982

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.