Evidence map›Paper›PMID 39107797›Full record

ArticleActa neuropathologica communications2024

Genome-wide CRISPR-Cas9 knockout screens identify DNMT1 as a druggable dependency in sonic hedgehog medulloblastoma.

Foteini Tsiami, Chiara Lago, Noemi Pozza, Federica Piccioni, Xuesong Zhao, Fabienne Lülsberg, David E Root, Luca Tiberi, Marcel Kool, Jens Schittenhelm and 4 more

Abstract read
In one paragraph

Article in Acta neuropathologica communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. From developmental origins to relapse: molecular and therapeutic insights in medulloblastoma.Child's nervous system : ChNS : official journal of the International Society for Pediatric Neurosurgery · 2026
    Review
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  7. Connecting the Dots: AMOG/βInternational journal of molecular sciences · 2025
    Review
  8. Article
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  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Foteini TsiamiDepartment of Neurology and Interdisciplinary Neuro-Oncology, Hertie Institute for Clinical Brain Research, University Hospital Tübingen, Eberhard Karls University, Tübingen, Germany.ORCID 0009-0001-6070-0434
Chiara LagoArmenise-Harvard Laboratory of Brain Disorders and Cancer, CIBIO, Trento, Italy.ORCID 0000-0002-1317-7847
Noemi PozzaArmenise-Harvard Laboratory of Brain Disorders and Cancer, CIBIO, Trento, Italy.
Federica PiccioniGenetic Perturbation Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA.ORCID 0000-0003-1210-3210
Xuesong ZhaoDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID 0000-0003-3007-7124
Fabienne LülsbergInstitute for Anatomy, Anatomy and Cell Biology, Rheinische Friedrich-Wilhelms-University, Bonn, Germany.
David E RootGenetic Perturbation Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA.ORCID 0000-0001-5122-861X
Luca TiberiArmenise-Harvard Laboratory of Brain Disorders and Cancer, CIBIO, Trento, Italy.ORCID 0000-0002-5983-3782
Marcel KoolHopp Children's Cancer Center (KITZ), Heidelberg, Germany.ORCID 0000-0002-6557-5468
Jens SchittenhelmDepartment of Pathology and Neuropathology, Institute of Neuropathology, University Hospital Tübingen, Eberhard Karls University, Tübingen, Germany.ORCID 0000-0002-9168-6209
Pratiti BandopadhayayDana-Farber/Boston Children´S Cancer and Blood Disorders Center, Boston, MA, USA.ORCID 0000-0002-4175-4760
Rosalind A SegalDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID 0000-0001-9850-8432
Ghazaleh TabatabaiDepartment of Neurology and Interdisciplinary Neuro-Oncology, Hertie Institute for Clinical Brain Research, University Hospital Tübingen, Eberhard Karls University, Tübingen, Germany.ORCID 0000-0002-3542-8782
Daniel J MerkDepartment of Neurology and Interdisciplinary Neuro-Oncology, Hertie Institute for Clinical Brain Research, University Hospital Tübingen, Eberhard Karls University, Tübingen, Germany. daniel.merk@uni-tuebingen.de.ORCID 0000-0003-2935-6919

Funding

Genetic Analysis and Manipulation Core (GAEC)P50HD105351 · NICHD · BOSTON CHILDREN'S HOSPITAL · PI SCOTT Loren POMEROY, MUSTAFA SAHIN · 2021 to 2026
$9.4M
(PQ9) The role of Bclw (bcl2l2) in preventing chemotherapy induced neuropathyR01CA205255 · NCI · DANA-FARBER CANCER INST · PI ROSALIND ANNE SEGAL · 2016 to 2026
$5.8M
German Research Foundation EXC 2180-390900677NCI NIH HHS R01 CA205255NICHD NIH HHS P50 HD105351Wilhelm Sander-Stiftung 2022.094.1
6 · The paper itself

Abstract

Sonic hedgehog subgroup of medulloblastoma (SHH-MB) is characterized by aberrant activation of the SHH signaling pathway. An inhibition of the positive SHH regulator Smoothened (SMO) has demonstrated promising clinical efficacy. Yet, primary and acquired resistance to SMO inhibitors limit their efficacy. An understanding of underlying molecular mechanisms of resistance to therapy is warranted to bridge this unmet need. Here, we make use of genome-wide CRISPR-Cas9 knockout screens in murine SMB21 and human DAOY cells, in order to unravel genetic dependencies and drug-related genetic interactors that could serve as alternative therapeutic targets for SHH-MB. Our screens reinforce SMB21 cells as a faithful model system for SHH-MB, as opposed to DAOY cells, and identify members of the epigenetic machinery including DNA methyltransferase 1 (DNMT1) as druggable targets in SHH-dependent tumors. We show that Dnmt1 plays a crucial role in normal murine cerebellar development and is required for SHH-MB growth in vivo. Additionally, DNMT1 pharmacological inhibition alone and in combination with SMO inhibition effectively inhibits tumor growth in murine and human SHH-MB cell models and prolongs survival of SHH-MB mouse models by inhibiting SHH signaling output downstream of SMO. In conclusion, our data highlight the potential of inhibiting epigenetic regulators as a novel therapeutic avenue in SMO-inhibitor sensitive as well as resistant SHH-MBs.

Indexed as

Cerebellar NeoplasmsCRISPR-Cas SystemsDNA (Cytosine-5-)-Methyltransferase 1Hedgehog ProteinsMedulloblastomaAnimalsCell Line, TumorGene Knockout TechniquesHumansMiceSmoothened ReceptorDNA (Cytosine-5-)-Methyltransferase 1DNMT1 protein, humanDnmt1 protein, mouseHedgehog ProteinsSmoothened ReceptorCombinatorial treatmentDNMT1Functional genomicsMedulloblastomaSHH pathwaySynergy

Identifiers

PMID39107797
PMCPMC11304869

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.