Evidence map›Paper›PMID 39107295›Full record

ArticleNutrition & diabetes2024

Pathogenic gene connections in type 2 diabetes and non-alcoholic fatty liver disease: a bioinformatics analysis and mouse model investigations experiments.

Chao Chen, Kunhuan Yang, Yuhan Zhang, Meiqi Lu, Xiaoyan Zhao, Zheng Wan

Abstract read
In one paragraph

Article in Nutrition & diabetes, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

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  7. Single-cell hdWGCNA reveals a novel diagnostic model and signature genes of macrophages associated with chronic obstructive pulmonary disease.Inflammation research : official journal of the European Histamine Research Society ... [et al.] · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Chao ChenInstitute of Genomics, School of Medicine, Huaqiao University, 668 Jimei Road, Xiamen, 361021, China. chenchao@hqu.edu.cn.ORCID 0000-0002-3191-0838
Kunhuan YangSchool of Medicine, Xiamen University, Xiamen, 361000, China.ORCID 0009-0005-4199-1685
Yuhan ZhangSchool of Medicine, Xiamen University, Xiamen, 361000, China.ORCID 0009-0006-3198-7487
Meiqi LuSchool of Medicine, Xiamen University, Xiamen, 361000, China.ORCID 0000-0002-8603-8776
Xiaoyan ZhaoSchool of Medicine, Xiamen University, Xiamen, 361000, China.
Zheng WanSchool of Medicine, Xiamen University, Xiamen, 361000, China. wanzheng0626@xmu.edu.cn.ORCID 0000-0001-8455-3478

Funding

National Natural Science Foundation of China (National Science Foundation of China) 82301227Natural Science Foundation of Fujian Province (Fujian Provincial Natural Science Foundation) 2022J05298Natural Science Foundation of Fujian Province (Fujian Provincial Natural Science Foundation) 2023J05049
6 · The paper itself

Abstract

backgroundType 2 diabetes (T2D) and non-alcoholic fatty liver disease (NAFLD) are prevalent metabolic disorders with overlapping pathophysiological mechanisms. A comprehensive understanding of the shared molecular pathways involved in these conditions can advance the development of effective therapeutic interventions.

methodsWe used two datasets sourced from the Gene Expression Omnibus (GEO) database to identify common differentially expressed genes (DEGs) between T2D and NAFLD. Subsequently, we conducted Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses to identify the enriched biological processes and signaling pathways. In addition, we performed a protein-protein interaction (PPI) network analysis to identify hub genes with pivotal roles. To validate our findings, we established a type 2 diabetic mouse model with NAFLD.

resultsOur analysis identified 53 DEGs shared between T2D and NAFLD. Enrichment analysis revealed their involvement in signal transduction, transcriptional regulation, and cell proliferation as well as in the ferroptosis signaling pathways. PPI network analysis identified ten hub genes, namely CD44, CASP3, FYN, KLF4, HNRNPM, HNRNPU, FUBP1, RUNX1, NOTCH3, and ANXA2. We validated the differential expression of FYN, HNRNPU, and FUBP1 in liver tissues of a type 2 diabetic mouse model with NAFLD.

conclusionsOur study offers valuable insights into the shared molecular mechanisms underlying T2D and NAFLD. The identified hub genes and pathways present promising prospects as therapeutic targets to address these prevalent metabolic disorders.

Indexed as

Computational BiologyDiabetes Mellitus, Type 2Disease Models, AnimalNon-alcoholic Fatty Liver DiseaseProtein Interaction MapsAnimalsGene Expression ProfilingGene Regulatory NetworksHumansKruppel-Like Factor 4MaleMiceMice, Inbred C57BLSignal TransductionKlf4 protein, mouseKruppel-Like Factor 4

Identifiers

PMID39107295
PMCPMC11303809

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.