Evidence map›Paper›PMID 39106236›Full record

ReviewPloS one2024

Common sleep data pipeline for combined data sets.

Jesper Strøm, Andreas Larsen Engholm, Kristian Peter Lorenzen, Kaare B Mikkelsen

Abstract readReview
In one paragraph

Review in PloS one, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Jesper StrømDepartment of Electrical and Computer Engineering, Aarhus University, Aarhus N, Denmark.ORCID 0009-0004-4705-8178
Andreas Larsen EngholmDepartment of Electrical and Computer Engineering, Aarhus University, Aarhus N, Denmark.
Kristian Peter LorenzenDepartment of Electrical and Computer Engineering, Aarhus University, Aarhus N, Denmark.
Kaare B MikkelsenDepartment of Electrical and Computer Engineering, Aarhus University, Aarhus N, Denmark.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Over the past few years, sleep research has shown impressive performance of deep neural networks in the area of automatic sleep-staging. Recent studies have demonstrated the necessity of combining multiple data sets to obtain sufficiently generalizing results. However, working with large amounts of sleep data can be challenging, both from a hardware perspective and because of the different preprocessing steps necessary for distinct data sources. Here we review the possible obstacles and present an open-source pipeline for automatic data loading. Our solution includes both a standardized data store as well as a 'data serving' portion which can be used to train neural networks on the standardized data, allowing for different configuration options for different studies and machine learning designs. The pipeline, including implementation, is made public to ensure better and more reproducible sleep research.

Indexed as

Neural Networks, ComputerSleepHumansMachine LearningSleep Stages

Identifiers

PMID39106236
PMCPMC11302895

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.