Evidence map›Paper›PMID 39105673›Full record

ArticleThe Biochemical journal2024

1-Deoxy-d-xylulose 5-phosphate reductoisomerase as target for anti Toxoplasma gondii agents: crystal structure, biochemical characterization and biological evaluation of inhibitors.

Flaminia Mazzone, Astrid Hoeppner, Jens Reiners, Christoph G W Gertzen, Violetta Applegate, Mona A Abdullaziz, Julia Gottstein, Daniel Degrandi, Martina Wesemann, Thomas Kurz and 2 more

Abstract read
In one paragraph

Article in The Biochemical journal, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Flaminia MazzoneInstitute of Medical Microbiology and Hospital Hygiene, Heinrich Heine University, Düsseldorf, Germany.ORCID 0000-0003-1429-230X
Astrid HoeppnerCenter for Structural Studies, Heinrich Heine University, Düsseldorf, Germany.
Jens ReinersCenter for Structural Studies, Heinrich Heine University, Düsseldorf, Germany.
Christoph G W GertzenCenter for Structural Studies, Heinrich Heine University, Düsseldorf, Germany.
Violetta ApplegateCenter for Structural Studies, Heinrich Heine University, Düsseldorf, Germany.
Mona A AbdullazizInstitute of Pharmaceutical and Medicinal Chemistry, Heinrich Heine University, Düsseldorf, Germany.
Julia GottsteinInstitute of Biochemistry, Heinrich Heine University, Düsseldorf, Germany.
Daniel DegrandiInstitute of Medical Microbiology and Hospital Hygiene, Heinrich Heine University, Düsseldorf, Germany.ORCID 0000-0001-6281-0357
Martina WesemannInstitute of Biochemistry, Heinrich Heine University, Düsseldorf, Germany.
Thomas KurzInstitute of Pharmaceutical and Medicinal Chemistry, Heinrich Heine University, Düsseldorf, Germany.
Sander H J SmitsCenter for Structural Studies, Heinrich Heine University, Düsseldorf, Germany.
Klaus PfefferInstitute of Medical Microbiology and Hospital Hygiene, Heinrich Heine University, Düsseldorf, Germany.ORCID 0000-0002-5652-6330

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Toxoplasma gondii is a widely distributed apicomplexan parasite causing toxoplasmosis, a critical health issue for immunocompromised individuals and for congenitally infected foetuses. Current treatment options are limited in number and associated with severe side effects. Thus, novel anti-toxoplasma agents need to be identified and developed. 1-Deoxy-d-xylulose 5-phosphate reductoisomerase (DXR) is considered the rate-limiting enzyme in the non-mevalonate pathway for the biosynthesis of the isoprenoid precursors isopentenyl pyrophosphate and dimethylallyl pyrophosphate in the parasite, and has been previously investigated for its key role as a novel drug target in some species, encompassing Plasmodia, Mycobacteria and Escherichia coli. In this study, we present the first crystal structure of T. gondii DXR (TgDXR) in a tertiary complex with the inhibitor fosmidomycin and the cofactor NADPH in dimeric conformation at 2.5 Å resolution revealing the inhibitor binding mode. In addition, we biologically characterize reverse α-phenyl-β-thia and β-oxa fosmidomycin analogues and show that some derivatives are strong inhibitors of TgDXR which also, in contrast with fosmidomycin, inhibit the growth of T. gondii in vitro. Here, ((3,4-dichlorophenyl)((2-(hydroxy(methyl)amino)-2-oxoethyl)thio)methyl)phosphonic acid was identified as the most potent anti T. gondii compound. These findings will enable the future design and development of more potent anti-toxoplasma DXR inhibitors.

Indexed as

Aldose-Ketose IsomerasesFosfomycinMultienzyme ComplexesToxoplasmaCrystallography, X-RayEnzyme InhibitorsHumansModels, MolecularNADPOxidoreductasesProtozoan Proteins1-deoxy-D-xylulose 5-phosphate reductoisomeraseAldose-Ketose IsomerasesEnzyme InhibitorsFosfomycinfosmidomycinMultienzyme ComplexesNADPOxidoreductasesProtozoan Proteinsanti-infectivecrystal structureDXRDXR inhibitorsenzymatic assayfosmidomycingrowth inhibitionparasiteSAXSToxoplasma gondii

Identifiers

PMID39105673
PMCPMC11346426

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.