Evidence map›Paper›PMID 39104285›Full record

ArticleDatabase : the journal of biological databases and curation2024

FatPlants: a comprehensive information system for lipid-related genes and metabolic pathways in plants.

Chunhui Xu, Trey Shaw, Sai Akhil Choppararu, Yiwei Lu, Shaik Naveed Farooq, Yongfang Qin, Matt Hudson, Brock Weekley, Michael Fisher, Fei He and 9 more

Abstract read
In one paragraph

Article in Database : the journal of biological databases and curation, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Chunhui XuInstitute for Data Science and Informatics, University of Missouri, 22 Heinkel Building, Columbia, MO 65211, United States.ORCID 0000-0001-5797-2546
Trey ShawChristopher S. Bond Life Sciences Center, University of Missouri, 1201 Rollins St, Columbia, MO 65211, United States.
Sai Akhil ChoppararuChristopher S. Bond Life Sciences Center, University of Missouri, 1201 Rollins St, Columbia, MO 65211, United States.
Yiwei LuChristopher S. Bond Life Sciences Center, University of Missouri, 1201 Rollins St, Columbia, MO 65211, United States.
Shaik Naveed FarooqChristopher S. Bond Life Sciences Center, University of Missouri, 1201 Rollins St, Columbia, MO 65211, United States.
Yongfang QinChristopher S. Bond Life Sciences Center, University of Missouri, 1201 Rollins St, Columbia, MO 65211, United States.
Matt HudsonChristopher S. Bond Life Sciences Center, University of Missouri, 1201 Rollins St, Columbia, MO 65211, United States.
Brock WeekleyChristopher S. Bond Life Sciences Center, University of Missouri, 1201 Rollins St, Columbia, MO 65211, United States.
Michael FisherChristopher S. Bond Life Sciences Center, University of Missouri, 1201 Rollins St, Columbia, MO 65211, United States.
Fei HeChristopher S. Bond Life Sciences Center, University of Missouri, 1201 Rollins St, Columbia, MO 65211, United States.
Jose Roberto Da Silva NascimentoChristopher S. Bond Life Sciences Center, University of Missouri, 1201 Rollins St, Columbia, MO 65211, United States.
Nicholas WergelesChristopher S. Bond Life Sciences Center, University of Missouri, 1201 Rollins St, Columbia, MO 65211, United States.
Trupti JoshiInstitute for Data Science and Informatics, University of Missouri, 22 Heinkel Building, Columbia, MO 65211, United States.
Philip D BatesInstitute of Biological Chemistry, Washington State University, 101D Plant Sciences Building, Pullman, WA 99164, United States.
Abraham J KooDepartment of Biochemistry, University of Missouri, Schweitzer Hall, 117, 503 S College Ave, Columbia, MO 65211, United States.
Doug K AllenAgriculture Research Service, United States Department of Agriculture, 975 N Warson Rd, St. Louis, MO 63132, United States.
Edgar B CahoonDepartment of Biochemistry and Center for Plant Science Innovation, University of Nebraska, 1901 Vine St, Lincoln, NE 68588, United States.
Jay J ThelenChristopher S. Bond Life Sciences Center, University of Missouri, 1201 Rollins St, Columbia, MO 65211, United States.
Dong XuInstitute for Data Science and Informatics, University of Missouri, 22 Heinkel Building, Columbia, MO 65211, United States.ORCID 0000-0002-4809-0514

Funding

Image-guided Biocuration of Disease Pathways From Scientific LiteratureR01LM013392 · NLM · UNIVERSITY OF MISSOURI-COLUMBIA · PI POPESCU, MIHAIL · 2020 to 2023
$1.3M
Department of Energy DE-SC0023142National Institute of Health R01LM013392National Science Foundation IOS-1829365NLM NIH HHS R01 LM013392
6 · The paper itself

Abstract

FatPlants, an open-access, web-based database, consolidates data, annotations, analysis results, and visualizations of lipid-related genes, proteins, and metabolic pathways in plants. Serving as a minable resource, FatPlants offers a user-friendly interface for facilitating studies into the regulation of plant lipid metabolism and supporting breeding efforts aimed at increasing crop oil content. This web resource, developed using data derived from our own research, curated from public resources, and gleaned from academic literature, comprises information on known fatty-acid-related proteins, genes, and pathways in multiple plants, with an emphasis on Glycine max, Arabidopsis thaliana, and Camelina sativa. Furthermore, the platform includes machine-learning based methods and navigation tools designed to aid in characterizing metabolic pathways and protein interactions. Comprehensive gene and protein information cards, a Basic Local Alignment Search Tool search function, similar structure search capacities from AphaFold, and ChatGPT-based query for protein information are additional features. Database URL: https://www.fatplants.net/.

Indexed as

Databases, GeneticArabidopsisGenes, PlantLipid MetabolismMetabolic Networks and PathwaysPlant ProteinsPlant Proteins

Identifiers

PMID39104285
PMCPMC11300840

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.