Evidence map›Paper›PMID 39103849›Full record

ArticleBMC medical informatics and decision making2024

An improved data augmentation approach and its application in medical named entity recognition.

Hongyu Chen, Li Dan, Yonghe Lu, Minghong Chen, Jinxia Zhang

Abstract read
In one paragraph

Article in BMC medical informatics and decision making, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Augmenting Electronic Health Records for Adverse Event Detection.medRxiv : the preprint server for health sciences · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Hongyu Chen *School of Information Management, Sun Yat-Sen University, Guangzhou, 510006, China.
Li Dan *School of Information Management, Sun Yat-Sen University, Guangzhou, 510006, China.
Yonghe LuSchool of Artificial Intelligence, Sun Yat-Sen University, Zhuhai, 519082, China. luyonghe@mail.sysu.edu.cn.
Minghong ChenSchool of Information Management, Sun Yat-Sen University, Guangzhou, 510006, China.
Jinxia ZhangDepartment of Cardiology, General Hospital of Southern Theatre Command of PLA, Guangzhou, 510010, China. zhjinxia@foxmail.com.

Funding

Guangzhou Science and Technology Planning Project 202002020036
6 · The paper itself

Abstract

Performing data augmentation in medical named entity recognition (NER) is crucial due to the unique challenges posed by this field. Medical data is characterized by high acquisition costs, specialized terminology, imbalanced distributions, and limited training resources. These factors make achieving high performance in medical NER particularly difficult. Data augmentation methods help to mitigate these issues by generating additional training samples, thus balancing data distribution, enriching the training dataset, and improving model generalization. This paper proposes two data augmentation methods-Contextual Random Replacement based on Word2Vec Augmentation (CRR) and Targeted Entity Random Replacement Augmentation (TER)-aimed at addressing the scarcity and imbalance of data in the medical domain. When combined with a deep learning-based Chinese NER model, these methods can significantly enhance performance and recognition accuracy under limited resources. Experimental results demonstrate that both augmentation methods effectively improve the recognition capability of medical named entities. Specifically, the BERT-BiLSTM-CRF model achieved the highest F1 score of 83.587%, representing a 1.49% increase over the baseline model. This validates the importance and effectiveness of data augmentation in medical NER.

Indexed as

Deep LearningHumansNatural Language ProcessingData augmentationDeep learningMedical named entity recognitionReplacement augmentationText features

Identifiers

PMID39103849
PMCPMC11302003

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.