ReviewNature genetics2024
The Ruminant Telomere-to-Telomere (RT2T) Consortium.
Abstract readReview
In one paragraph
Review in Nature genetics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.
0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
25 citing papers in PubMed.
- Pan-genomics and multi-omics for deciphering genetic variation and accelerating genetic improvement in ruminant livestock.Functional & integrative genomics · 2026Review
- Bridging precision agriculture and human medicine through comparative genetics.Nature reviews. Genetics · 2026Review
- Finishing a complete giraffe genome from telomere to telomere with Verkko-Fillet.Cell genomics · 2026Article
- Article
- Pangenome-based structural variant imputation enables large-scale genotype-phenotype studies in dairy cattle.Nature communications · 2026Article
- From farm to lab: gene-edited sheep transforming bone research.JBMR plus · 2026Review
- The Vertebrate Genomes Project Phase I: A global reference genome resource.bioRxiv : the preprint server for biology · 2026Article
- Toward telomere-to-telomere genomics in Fabaceae: Unlocking comparative and functional insights into symbiotic nitrogen fixation.Cell genomics · 2026Review
- Understanding super enhancers in genome architecture and their roles in livestock breeding.BMC genomics · 2026Review
- Haplotype-Resolved Genome Assemblies for Norwegian Red Cattle.Animal genetics · 2026Article
- Phased-assembly-driven pangenome graphs for structural variant genotyping and complex trait mapping in dairy cattle.Nature communications · 2026Article
- Improved Visualization Method of DNA Sequences and its Application in Phylogenetic Analysis.Combinatorial chemistry & high throughput screening · 2026Article
- Finishing a complete giraffe genome from telomere to telomere with Verkko-Fillet.bioRxiv : the preprint server for biology · 2025Article
- Insights into natural neocentromere evolution from a cattle T2T X chromosome.Nature communications · 2025Article
- Exploring cattle structural variation in the era of long reads, pangenome graphs, and near-complete assemblies.Journal of animal science and biotechnology · 2025Review
- Bighorn sheep T2T genome assembly reveals differences in immune genes: a potential cause of high morbidity due to respiratory pathogens.bioRxiv : the preprint server for biology · 2025Article
- A complete diploid human genome benchmark for personalized genomics.bioRxiv : the preprint server for biology · 2025Article
- CENP-A is diluted during bovine spermatogenesis and is maintained at internally positioned centromere clusters in mature bull sperm.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2025Article
- Global Pangenome Analysis Highlights the Critical Role of Structural Variants in Cattle Improvement and Identifies a Unique Event as a Novel Enhancer in IGFBP7+ Cells.Molecular biology and evolution · 2025Article
- Overcoming limitations to customize DeepVariant for domesticated animals with TrioTrain.Genome research · 2025Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
78 authors.
Theodore S Kalbfleisch *Department of Veterinary Science, University of Kentucky, Lexington, KY, USA.ORCID http://orcid.org/0000-0002-2370-8189
Stephanie D McKay *Division of Animal Sciences, University of Missouri, Columbia, MO, USA.ORCID http://orcid.org/0000-0003-1434-3111
Brenda M Murdoch *Department of Animal, Veterinary and Food Sciences, University of Idaho, Moscow, ID, USA.ORCID http://orcid.org/0000-0001-8675-3473
David L AdelsonSchool of Biological Sciences, the University of Adelaide, North Terrace, Adelaide, South Australia, Australia.ORCID http://orcid.org/0000-0003-2404-5636
Diego Almansa-VillaGenomics and Bioinformatics Unit, Departamento de Ciencias Biológicas, CENUR Litoral Norte, Universidad de la República, Salto, Uruguay.
Gabrielle BeckerDepartment of Animal, Veterinary and Food Sciences, University of Idaho, Moscow, ID, USA.ORCID http://orcid.org/0000-0002-1455-6443
Linda M BeckettDepartment of Animal Sciences, Purdue University, West Lafayette, IN, USA.
María José Benítez-GaleanoGenomics and Bioinformatics Unit, Departamento de Ciencias Biológicas, CENUR Litoral Norte, Universidad de la República, Salto, Uruguay.ORCID http://orcid.org/0000-0002-6332-1632
Fernando BiaseSchool of Animal Sciences, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA.
Theresa CaseyDepartment of Animal Sciences, Purdue University, West Lafayette, IN, USA.ORCID http://orcid.org/0000-0002-8835-3550
Edward ChuongBioFrontiers Institute, Department of Molecular Cellular and Developmental Biology, University of Colorado Boulder, Boulder, CO, USA.ORCID http://orcid.org/0000-0002-5392-937X
Emily ClarkThe Roslin Institute, University of Edinburgh, Edinburgh, UK.
Shannon ClarkeInvermay Agricultural Centre, AgResearch Ltd, Mosgiel, New Zealand.ORCID http://orcid.org/0000-0002-4615-8917
Noelle CockettDepartment of Animal, Dairy and Veterinary Sciences, Utah State University, Logan, UT, USA.
Christine CouldreyLivestock Improvement Corporation, Hamilton, New Zealand.
Brian W DavisDepartment of Veterinary Pathobiology, School of Veterinary Medicine and Biomedical Sciences, Texas A&M University, College Station, TX, USA.ORCID http://orcid.org/0000-0002-6121-135X
Christine G ElsikDivision of Animal Sciences, University of Missouri, Columbia, MO, USA.ORCID http://orcid.org/0000-0002-4248-7713
Thomas FarautGenPhySE, Université de Toulouse, INRAE, ENVT, Castanet Tolosan, France.
Yahui GaoAnimal Genomics and Improvement Laboratory, USDA ARS, Beltsville, MD, USA.
Carine GenetGenPhySE, Université de Toulouse, INRAE, ENVT, Castanet Tolosan, France.ORCID http://orcid.org/0000-0002-3734-9017
Patrick GradyInstitute for Systems Genomics, University of Connecticut, Storrs, CT, USA.ORCID http://orcid.org/0000-0003-0180-7810
Jonathan GreenDivision of Animal Sciences, University of Missouri, Columbia, MO, USA.
Richard GreenInstitute for Systems Genomics, University of Connecticut, Storrs, CT, USA.
Dailu GuanDepartment of Animal Science, University of California, Davis, Davis, CA, USA.ORCID http://orcid.org/0000-0001-8800-3158
Darren HagenDepartment of Animal and Food Sciences, Oklahoma State University, Stillwater, OK, USA.ORCID http://orcid.org/0000-0001-8295-020X
Gabrielle A HartleyInstitute for Systems Genomics, University of Connecticut, Storrs, CT, USA.
Mike HeatonU.S. Meat Animal Research Center, USDA ARS, Clay Center, NE, USA.ORCID http://orcid.org/0000-0003-1386-1208
Savannah J HoytInstitute for Systems Genomics, University of Connecticut, Storrs, CT, USA.
Wen HuangDepartment of Animal Science, Michigan State University, East Lansing, MI, USA.ORCID http://orcid.org/0000-0001-6788-8364
Erich JarvisVertebrate Genome Laboratory, the Rockefeller University, New York, NY, USA.
Jenna KallebergDivision of Animal Sciences, University of Missouri, Columbia, MO, USA.ORCID http://orcid.org/0000-0003-4505-8516
Hasan KhatibDepartment of Animal and Dairy Sciences, the University of Wisconsin-Madison, Madison, WI, USA.ORCID http://orcid.org/0000-0003-1312-1453
Klaus-Peter KoepfiSmithsonian-Mason School of Conservation, George Mason University, Front Royal, VA, USA.ORCID http://orcid.org/0000-0001-7281-0676
James KoltesDepartment of Animal Science, Iowa State University, Ames, IA, USA.ORCID http://orcid.org/0000-0003-1897-5685
Sergey KorenGenome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.ORCID http://orcid.org/0000-0002-1472-8962
Christa KuehnFriedrich-Loeffler-Institute (German Federal Research Institute for Animal Health), Greifswald-Insel Riems, Germany.ORCID http://orcid.org/0000-0002-0216-424X
Tosso LeebInstitute of Genetics, Vetsuisse Faculty, University of Bern, Bern, Switzerland.ORCID http://orcid.org/0000-0003-0553-4880
Alexander LeonardAnimal Genomics, ETH Zürich, Zurich, Switzerland.ORCID http://orcid.org/0000-0001-8425-5630
George E LiuAnimal Genomics and Improvement Laboratory, USDA ARS, Beltsville, MD, USA.ORCID http://orcid.org/0000-0003-0192-6705
Wai Yee LowThe Davies Research Centre, School of Animal and Veterinary Sciences, University of Adelaide, Roseworthy, South Australia, Australia.ORCID http://orcid.org/0000-0002-0749-765X
Hunter McConnellDivision of Animal Sciences, University of Missouri, Columbia, MO, USA.ORCID http://orcid.org/0009-0008-3490-9518
Kathryn McRaeInvermay Agricultural Centre, AgResearch Ltd, Mosgiel, New Zealand.
Karen MigaUC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, USA.
Michelle MouselAnimal Disease Research Unit, USDA ARS, Pullman, WA, USA.
Holly NeibergsDepartment of Animal Science, Washington State University, Pullman, WA, USA.
Temitayo OlagunjuDepartment of Animal, Veterinary and Food Sciences, University of Idaho, Moscow, ID, USA.ORCID http://orcid.org/0000-0002-1497-6173
Matt PennellDepartment of Quantitative and Computational Biology, University of Southern California, Los Angeles, CA, USA.
Bruna PetryDepartment of Animal Science, Iowa State University, Ames, IA, USA.ORCID http://orcid.org/0000-0001-9559-8559
Mirjam PewsnerInstitute of Fish and Wildlife Health, Vetsuisse Faculty, University of Bern, Bern, Switzerland.
Adam M PhillippyGenome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.ORCID http://orcid.org/0000-0003-2983-8934
Brandon D PickettGenome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.ORCID http://orcid.org/0000-0001-8235-4440
Paulene PinedaThe Davies Research Centre, School of Animal and Veterinary Sciences, University of Adelaide, Roseworthy, South Australia, Australia.
Tamara PotapovaStowers Institute for Medical Research, Kansas City, MO, USA.
Satyanarayana RachaganiVeterinary Medicine and Surgery, NextGen Precision Health Institute, University of Missouri, Columbia, MO, USA.
Arang RhieGenome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.ORCID http://orcid.org/0000-0002-9809-8127
Monique RijnkelsDepartment of Veterinary Integrative Biosciences, School of Veterinary Medicine and Biomedical Sciences, Texas A&M University, College Station, TX, USA.
Annie RobicGenPhySE, Université de Toulouse, INRAE, ENVT, Castanet Tolosan, France.ORCID http://orcid.org/0000-0003-3071-8614
Nelida Rodriguez OsorioGenomics and Bioinformatics Unit, Departamento de Ciencias Biológicas, CENUR Litoral Norte, Universidad de la República, Salto, Uruguay.
Yana SafonovaComputer Science and Engineering Department, Huck Institutes of the Life Sciences, Pennsylvania State University, State College, PA, USA.ORCID http://orcid.org/0000-0002-9634-4216
Gustavo SchettiniSchool of Animal Sciences, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA.
Robert D SchnabelDivision of Animal Sciences, University of Missouri, Columbia, MO, USA.ORCID http://orcid.org/0000-0001-5018-7641
Nagabhishek Sirpu NateshDepartment of Veterinary Medicine and Surgery, University of Missouri, Columbia, MO, USA.
Morgan StegemillerDepartment of Animal, Veterinary and Food Sciences, University of Idaho, Moscow, ID, USA.ORCID http://orcid.org/0000-0001-9675-3047
Jessica StorerDepartment of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA.
Paul StothardDepartment of Agricultural, Food and Nutritional Science, University of Alberta, Edmonton, Alberta, Canada.ORCID http://orcid.org/0000-0003-4263-969X
Caleb StullDivision of Animal Sciences, University of Missouri, Columbia, MO, USA.ORCID http://orcid.org/0009-0001-5370-9852
Gwenola Tosser-KloppGenPhySE, Université de Toulouse, INRAE, ENVT, Castanet Tolosan, France.ORCID http://orcid.org/0000-0003-0550-4673
Germán M TragliaGenomics and Bioinformatics Unit, Departamento de Ciencias Biológicas, CENUR Litoral Norte, Universidad de la República, Salto, Uruguay.ORCID http://orcid.org/0000-0002-4780-5311
Christopher K TuggleDepartment of Animal Science, Iowa State University, Ames, IA, USA.ORCID http://orcid.org/0000-0002-4229-5316
Curtis P Van TassellAnimal Genomics and Improvement Laboratory, USDA ARS, Beltsville, MD, USA.ORCID http://orcid.org/0000-0002-8416-2087
Corey WatsonDepartment of Biochemistry and Molecular Genetics, University of Louisville, Louisville, KY, USA.ORCID http://orcid.org/0000-0001-7248-8787
Rosemarie WeikardInstitute of Genome Biology, Research Institute for Farm Animal Biology (FBN), Dummerstorf, Germany.
Klaus WimmersInstitute of Genome Biology, Research Institute for Farm Animal Biology (FBN), Dummerstorf, Germany.ORCID http://orcid.org/0000-0002-9523-6790
Shangqian XieDepartment of Animal, Veterinary and Food Sciences, University of Idaho, Moscow, ID, USA.
Liu YangAnimal Genomics and Improvement Laboratory, USDA ARS, Beltsville, MD, USA.ORCID http://orcid.org/0000-0002-4179-8587
Timothy P L SmithU.S. Meat Animal Research Center, USDA ARS, Clay Center, NE, USA. tim.smith2@usda.gov.ORCID http://orcid.org/0000-0003-1611-6828
Rachel J O'NeillInstitute for Systems Genomics, University of Connecticut, Storrs, CT, USA. rachel.oneill@uconn.edu.ORCID http://orcid.org/0000-0002-1525-6821
Benjamin D RosenAnimal Genomics and Improvement Laboratory, USDA ARS, Beltsville, MD, USA. ben.rosen@usda.gov.ORCID http://orcid.org/0000-0001-9395-8346
Funding
Single-molecule sequence assembly and analysisZIAHG200398 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI PHILLIPPY, ADAM · 2016 to 2025
$15.9MUnited States Department of Agriculture | Agricultural Research Service (USDA Agricultural Research Service) Grant Number 2023-67015-39000
Abstract
Telomere-to-telomere (T2T) assemblies reveal new insights into the structure and function of the previously 'invisible' parts of the genome and allow comparative analyses of complete genomes across entire clades. We present here an open collaborative effort, termed the 'Ruminant T2T Consortium' (RT2T), that aims to generate complete diploid assemblies for numerous species of the Artiodactyla suborder Ruminantia to examine chromosomal evolution in the context of natural selection and domestication of species used as livestock.
Indexed as
RuminantsTelomereAnimalsDiploidyEvolution, MolecularGenomePhylogenySelection, Genetic
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