Evidence map›Paper›PMID 39103556›Full record

ArticleNature neuroscience2024

An activity-regulated transcriptional program directly drives synaptogenesis.

Callista Yee, Yutong Xiao, Hongwen Chen, Anay R Reddy, Bing Xu, Taylor N Medwig-Kinney, Wan Zhang, Alan P Boyle, Wendy A Herbst, Yang Kevin Xiang and 2 more

Erratum issuedAbstract read
In one paragraph

Article in Nature neuroscience, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Reduced Mechanical Tactile Stimulation Under Space Microgravity Affects Synaptic Signaling and Contributes to Neuromuscular Aging in Caenorhabditis elegans.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2026
    Article
  3. Article
  4. Article
  5. Advances in drug addiction research usingFrontiers in cell and developmental biology · 2026
    Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Non-synaptic Mechanism of Ocular Dominance Plasticity.bioRxiv : the preprint server for biology · 2025
    Article
  11. Article
  12. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors.

Callista YeeHoward Hughes Medical Institute, Department of Biology, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0002-2928-492X
Yutong XiaoDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, NY, USA.
Hongwen ChenHoward Hughes Medical Institute, Department of Biology, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0002-1065-9808
Anay R ReddyHoward Hughes Medical Institute, Department of Biology, Stanford University, Stanford, CA, USA.
Bing XuDepartment of Pharmacology, University of California, Davis, Davis, CA, USA.
Taylor N Medwig-KinneyDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, NY, USA.
Wan ZhangDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, NY, USA.
Alan P BoyleDepartment of Human Genetics, University of Michigan, Ann Arbor, MI, USA.ORCID http://orcid.org/0000-0002-2081-1105
Wendy A HerbstHoward Hughes Medical Institute, Department of Biology, Stanford University, Stanford, CA, USA.
Yang Kevin XiangDepartment of Pharmacology, University of California, Davis, Davis, CA, USA.ORCID http://orcid.org/0000-0003-1786-9143
David Q MatusDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, NY, USA.
Kang ShenHoward Hughes Medical Institute, Department of Biology, Stanford University, Stanford, CA, USA. kangshen@stanford.edu.ORCID http://orcid.org/0000-0003-4059-8249

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Aric L Daul, Ann E. Rougvie · 2012 to 2026
$7.5M
Predicting the Impact of Genomic Variation on Cellular StatesU01HG011952 · NHGRI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Alan P Boyle · 2021 to 2026
$3.8M
RegulomeDB: A Resource for the Human RegulomeU24HG009293 · NHGRI · STANFORD UNIVERSITY · PI BOYLE, ALAN P, CHERRY, J. MICHAEL · 2020 to 2024
$3.3M
Elucidating the mechanisms underlying cell cycle regulation of invasive behaviorR01GM121597 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI MATUS, DAVID · 2017 to 2021
$2.1M
Mechanisms of synaptic specificity in C. elegansR37NS048392 · NINDS · STANFORD UNIVERSITY · PI SHEN, KANG · 2015 to 2019
$2.0M
High Throughput DNA Sequencer UpgradeS10OD018220 · OD · STANFORD UNIVERSITY · PI COLLER, JOHN · 2014 to 2014
$596k
Mechanisms of Presynaptic Maintenance in C. elegansF32NS129942 · NINDS · STANFORD UNIVERSITY · PI HERBST, WENDY · 2023 to 2025
$226k
Transcriptional regulation of morphogenetic behavior and invasive cell fate specification in C. elegansF31HD100091 · NICHD · STATE UNIVERSITY NEW YORK STONY BROOK · PI KINNEY, TAYLOR · 2019 to 2021
$117k
Howard Hughes Medical Institute (HHMI) InvestigatorHuman Frontier Science Program (HFSP) LT000127/2016NHGRI NIH HHS U01 HG011952NHGRI NIH HHS U24 HG009293NICHD NIH HHS F31 HD100091NIGMS NIH HHS R01 GM121597NIH HHS P40 OD010440NIH HHS S10 OD018220NINDS NIH HHS F32 NS129942NINDS NIH HHS R37 NS048392U.S. Department of Health & Human Services | NIH | Eunice Kennedy Shriver National Institute of Child Health and Human Development (NICHD) F31HD100091U.S. Department of Health & Human Services | NIH | National Human Genome Research Institute (NHGRI) U24HG009293U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) R01GM121597U.S. Department of Health & Human Services | NIH | National Institute of Neurological Disorders and Stroke (NINDS) F32NS129942U.S. Department of Health & Human Services | NIH | National Institute of Neurological Disorders and Stroke (NINDS) R37NS048392
6 · The paper itself

Abstract

Although the molecular composition and architecture of synapses have been widely explored, much less is known about what genetic programs directly activate synaptic gene expression and how they are modulated. Here, using Caenorhabditis elegans dopaminergic neurons, we reveal that EGL-43/MECOM and FOS-1/FOS control an activity-dependent synaptogenesis program. Loss of either factor severely reduces presynaptic protein expression. Both factors bind directly to promoters of synaptic genes and act together with CUT homeobox transcription factors to activate transcription. egl-43 and fos-1 mutually promote each other's expression, and increasing the binding affinity of FOS-1 to the egl-43 locus results in increased presynaptic protein expression and synaptic function. EGL-43 regulates the expression of multiple transcription factors, including activity-regulated factors and developmental factors that define multiple aspects of dopaminergic identity. Together, we describe a robust genetic program underlying activity-regulated synapse formation during development.

Indexed as

Caenorhabditis elegansCaenorhabditis elegans ProteinsDopaminergic NeuronsNeurogenesisSynapsesAnimalsGene Expression Regulation, DevelopmentalTranscription FactorsCaenorhabditis elegans ProteinsTranscription Factors

Identifiers

PMID39103556
PMCPMC11374667

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.