Evidence map›Paper›PMID 39103378›Full record

ArticleNature communications2024

PARP1-dependent DNA-protein crosslink repair.

Zita Fábián, Ellen S Kakulidis, Ivo A Hendriks, Ulrike Kühbacher, Nicolai B Larsen, Marta Oliva-Santiago, Junhui Wang, Xueyuan Leng, A Barbara Dirac-Svejstrup, Jesper Q Svejstrup and 3 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Visualizing DNA repair factor recruitment at sites of transcription in single cells.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2026
    Article
  7. Review
  8. Article
  9. Article
  10. Review
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Zita FábiánThe Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, DK-2200, Copenhagen, Denmark.ORCID 0000-0002-2259-1054
Ellen S KakulidisThe Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, DK-2200, Copenhagen, Denmark.ORCID 0009-0006-6049-8332
Ivo A Hendriks *The Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, DK-2200, Copenhagen, Denmark.ORCID 0000-0002-1439-3701
Ulrike Kühbacher *The Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, DK-2200, Copenhagen, Denmark.ORCID 0000-0001-6472-8883
Nicolai B Larsen *The Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, DK-2200, Copenhagen, Denmark.ORCID 0000-0001-5105-7056
Marta Oliva-SantiagoThe Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, DK-2200, Copenhagen, Denmark.ORCID 0000-0002-2935-8810
Junhui WangGenome Damage and Stability Centre, School of Life Sciences, University of Sussex, Falmer, Brighton, BN1 9RH, UK.
Xueyuan LengThe Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, DK-2200, Copenhagen, Denmark.
A Barbara Dirac-SvejstrupDepartment of Cellular and Molecular Medicine, University of Copenhagen, DK-2200, Copenhagen, Denmark.ORCID 0000-0003-0341-6944
Jesper Q SvejstrupDepartment of Cellular and Molecular Medicine, University of Copenhagen, DK-2200, Copenhagen, Denmark.ORCID 0000-0003-4964-6147
Michael L NielsenThe Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, DK-2200, Copenhagen, Denmark.ORCID 0000-0002-0067-9039
Keith CaldecottGenome Damage and Stability Centre, School of Life Sciences, University of Sussex, Falmer, Brighton, BN1 9RH, UK.ORCID 0000-0003-4255-9016
Julien P DuxinThe Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, DK-2200, Copenhagen, Denmark. julien.duxin@bric.ku.dk.ORCID 0000-0001-9389-4186

Funding

EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 European Research Council (H2020 Excellent Science - European Research Council) 715975Novo Nordisk Fonden (Novo Nordisk Foundation) NNF14CC0001
6 · The paper itself

Abstract

DNA-protein crosslinks (DPCs) are toxic lesions that inhibit DNA related processes. Post-translational modifications (PTMs), including SUMOylation and ubiquitylation, play a central role in DPC resolution, but whether other PTMs are also involved remains elusive. Here, we identify a DPC repair pathway orchestrated by poly-ADP-ribosylation (PARylation). Using Xenopus egg extracts, we show that DPCs on single-stranded DNA gaps can be targeted for degradation via a replication-independent mechanism. During this process, DPCs are initially PARylated by PARP1 and subsequently ubiquitylated and degraded by the proteasome. Notably, PARP1-mediated DPC resolution is required for resolving topoisomerase 1-DNA cleavage complexes (TOP1ccs) induced by camptothecin. Using the Flp-nick system, we further reveal that in the absence of PARP1 activity, the TOP1cc-like lesion persists and induces replisome disassembly when encountered by a DNA replication fork. In summary, our work uncovers a PARP1-mediated DPC repair pathway that may underlie the synergistic toxicity between TOP1 poisons and PARP inhibitors.

Indexed as

DNA RepairDNA ReplicationDNA Topoisomerases, Type IPoly (ADP-Ribose) Polymerase-1Poly ADP RibosylationAnimalsCamptothecinDNADNA DamageDNA, Single-StrandedHumansProtein Processing, Post-TranslationalUbiquitinationXenopus laevisXenopus ProteinsCamptothecinDNADNA, Single-StrandedDNA Topoisomerases, Type IPoly (ADP-Ribose) Polymerase-1Xenopus Proteins

Identifiers

PMID39103378
PMCPMC11300803

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.