Evidence map›Paper›PMID 39103347›Full record

ArticleNature communications2024

Evolution of Phytophthora infestans on its potato host since the Irish potato famine.

Allison Coomber, Amanda Saville, Jean Beagle Ristaino

Abstract readHistorical Article
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Genome editing of susceptibility geneFrontiers in plant science · 2026
    Article
  8. Review
  9. Review
  10. Deciphering the Molecular Interplay Between RXLR-EncodedInternational journal of molecular sciences · 2025
    Review
  11. Article
  12. Article
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Allison CoomberDepartment of Entomology and Plant Pathology, NC State University, Raleigh, NC, USA.ORCID 0009-0006-3546-9388
Amanda SavilleDepartment of Entomology and Plant Pathology, NC State University, Raleigh, NC, USA.ORCID 0000-0002-3922-0858
Jean Beagle RistainoDepartment of Entomology and Plant Pathology, NC State University, Raleigh, NC, USA. jean_ristaino@ncsu.edu.ORCID 0000-0002-9458-0514

Funding

North Carolina State University (NC State University) Grant Number 5572998
6 · The paper itself

Abstract

Phytophthora infestans is a major oomycete plant pathogen, responsible for potato late blight, which led to the Irish Potato Famine from 1845-1852. Since then, potatoes resistant to this disease have been bred and deployed worldwide. Their resistance (R) genes recognize pathogen effectors responsible for virulence and then induce a plant response stopping disease progression. However, most deployed R genes are quickly overcome by the pathogen. We use targeted sequencing of effector and R genes on herbarium specimens to examine the joint evolution in both P. infestans and potato from 1845-1954. Currently relevant effectors are historically present in P. infestans, but with alternative alleles compared to modern reference genomes. The historic FAM-1 lineage has the virulent Avr1 allele and the ability to break the R1 resistance gene before breeders deployed it in potato. The FAM-1 lineage is diploid, but later, triploid US-1 lineages appear. We show that pathogen virulence genes and host resistance genes have undergone significant changes since the Famine, from both natural and artificial selection.

Indexed as

Disease ResistancePhytophthora infestansPlant DiseasesSolanum tuberosumAllelesEvolution, MolecularFamineHistory, 19th CenturyHost-Pathogen InteractionsIrelandPhylogenyVirulence

Identifiers

PMID39103347
PMCPMC11300821

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.