Evidence map›Paper›PMID 39102893›Full record

ArticleThe Plant cell2024

MPK4-mediated phosphorylation of PHYTOCHROME INTERACTING FACTOR4 controls thermosensing by regulating histone variant H2A.Z deposition.

Neetu Verma, Dhanraj Singh, Lavanya Mittal, Gopal Banerjee, Stanzin Noryang, Alok Krishna Sinha

Abstract read
In one paragraph

Article in The Plant cell, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Epigenomics and Non-Coding RNAs in Soybean Adaptation to Abiotic Stresses.International journal of molecular sciences · 2025
    Review
  8. Plants (Basel, Switzerland) · 2025
    Article
  9. Article
  10. Priming thermotolerance: unlocking heat resilience for climate-smart crops.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025
    Review
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Neetu VermaNational Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi, 110067, India.ORCID 0009-0008-4561-6905
Dhanraj SinghNational Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi, 110067, India.ORCID 0000-0001-8619-5838
Lavanya MittalNational Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi, 110067, India.ORCID 0009-0007-0596-617X
Gopal BanerjeeNational Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi, 110067, India.ORCID 0000-0001-6879-0983
Stanzin NoryangNational Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi, 110067, India.ORCID 0009-0004-2632-6532
Alok Krishna SinhaNational Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi, 110067, India.ORCID 0000-0003-0820-9936

Funding

DBTDBT-BioCare BT/PR30748/BIC/101/1149/2018Department of BiotechnologyDepartment of Science and TechnologyGovernment of IndiaNational Institute of Plant Genome ResearchScience and Engineering Research BoardSir JC Bose Fellowship JCB/2020/000041
6 · The paper itself

Abstract

Plants can perceive a slight upsurge in ambient temperature and respond by undergoing morphological changes, such as elongated hypocotyls and early flowering. The dynamic functioning of PHYTOCHROME INTERACTING FACTOR4 (PIF4) in thermomorphogenesis is well established, although the complete regulatory pathway involved in thermosensing remains elusive. We establish that an increase in temperature from 22 to 28 °C induces upregulation and activation of MITOGEN-ACTIVATED PROTEIN KINASE 4 (MPK4) in Arabidopsis (Arabidopsis thaliana), subsequently leading to the phosphorylation of PIF4. Phosphorylated PIF4 represses the expression of ACTIN-RELATED PROTEIN 6 (ARP6), which is required for mediating the deposition of histone variant H2A.Z at its target loci. Furthermore, we demonstrate that variations in ARP6 expression in PIF4 phosphor-null and phosphor-mimetic seedlings affect hypocotyl growth at 22 and 28 °C by modulating the regulation of ARP6-mediated H2A.Z deposition at the loci of genes involved in elongating hypocotyl cells. Interestingly, the expression of MPK4 is also controlled by H2A.Z deposition in a temperature-dependent manner. Taken together, these findings highlight the regulatory mechanism of thermosensing by which MPK4-mediated phosphorylation of PIF4 affects ARP6-mediated H2A.Z deposition at the genes involved in hypocotyl cell elongation.

Indexed as

ArabidopsisArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsGene Expression Regulation, PlantHistonesMitogen-Activated Protein KinasesHypocotylMicrofilament ProteinsPhosphorylationTemperatureThermosensingArabidopsis ProteinsARP6 protein, ArabidopsisAtMPK4 protein, ArabidopsisBasic Helix-Loop-Helix ProteinsHistonesMicrofilament ProteinsMitogen-Activated Protein KinasesPIF4 protein, Arabidopsis

Identifiers

PMID39102893
PMCPMC11449107

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.