Evidence map›Paper›PMID 39101626›Full record

ArticleMolecular biology and evolution2024

Invasion and Amplification of Endogenous Retroviruses in Dasyuridae Marsupial Genomes.

Emma F Harding, Lewis K Mercer, Grace J H Yan, Paul D Waters, Peter A White

Abstract read
In one paragraph

Article in Molecular biology and evolution, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Emma F HardingSchool of Biotechnology and Biomolecular Science, UNSW Sydney, Sydney, Australia.ORCID 0000-0001-5067-962X
Lewis K MercerSchool of Biotechnology and Biomolecular Science, UNSW Sydney, Sydney, Australia.ORCID 0000-0001-6325-4700
Grace J H YanSchool of Biotechnology and Biomolecular Science, UNSW Sydney, Sydney, Australia.ORCID 0000-0001-5541-1948
Paul D WatersSchool of Biotechnology and Biomolecular Science, UNSW Sydney, Sydney, Australia.ORCID 0000-0002-4689-8747
Peter A WhiteSchool of Biotechnology and Biomolecular Science, UNSW Sydney, Sydney, Australia.ORCID 0000-0002-6046-9631

Funding

Australian Government Research Training Program ScholarshipsAustralian Research Council Discovery Projects DP210103512National Health and Medical Research Council 2021172
6 · The paper itself

Abstract

Retroviruses are an ancient viral family that have globally coevolved with vertebrates and impacted their evolution. In Australia, a continent that has been geographically isolated for millions of years, little is known about retroviruses in wildlife, despite the devastating impacts of a retrovirus on endangered koala populations. We therefore sought to identify and characterize Australian retroviruses through reconstruction of endogenous retroviruses from marsupial genomes, in particular the Tasmanian devil due to its high cancer incidence. We screened 19 marsupial genomes and identified over 80,000 endogenous retrovirus fragments which we classified into eight retrovirus clades. The retroviruses were similar to either Betaretrovirus (5/8) or Gammaretrovirus (3/8) retroviruses, but formed distinct phylogenetic clades compared to extant retroviruses. One of the clades (MEBrv 3) lost an envelope but retained retrotranspositional activity, subsequently amplifying throughout all Dasyuridae genomes. Overall, we provide insights into Australian retrovirus evolution and identify a highly active endogenous retrovirus within Dasyuridae genomes.

Indexed as

Endogenous RetrovirusesGenomeMarsupialiaPhylogenyAnimalsAustraliaEvolution, MolecularDFTDendogenous virusmarsupialretrovirusTasmanian devilvirus evolution

Identifiers

PMID39101626
PMCPMC11334065

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.