Evidence map›Paper›PMID 39100182›Full record

ArticleRoyal Society open science2024

How many specimens make a sufficient training set for automated three-dimensional feature extraction?

James M Mulqueeney, Alex Searle-Barnes, Anieke Brombacher, Marisa Sweeney, Anjali Goswami, Thomas H G Ezard

Abstract read
In one paragraph

Article in Royal Society open science, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Opportunities and Challenges in Applying AI to Evolutionary Morphology.Integrative organismal biology (Oxford, England) · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

James M MulqueeneySchool of Ocean & Earth Science, National Oceanography Centre Southampton, University of Southampton Waterfront Campus, Southampton, UK.ORCID https://orcid.org/0000-0003-3502-745X
Alex Searle-BarnesSchool of Ocean & Earth Science, National Oceanography Centre Southampton, University of Southampton Waterfront Campus, Southampton, UK.ORCID https://orcid.org/0000-0003-0389-7717
Anieke BrombacherSchool of Ocean & Earth Science, National Oceanography Centre Southampton, University of Southampton Waterfront Campus, Southampton, UK.ORCID https://orcid.org/0000-0003-2310-047X
Marisa SweeneySchool of Ocean & Earth Science, National Oceanography Centre Southampton, University of Southampton Waterfront Campus, Southampton, UK.
Anjali GoswamiDepartment of Life Sciences, Natural History Museum, London, UK.ORCID https://orcid.org/0000-0001-9465-810X
Thomas H G EzardSchool of Ocean & Earth Science, National Oceanography Centre Southampton, University of Southampton Waterfront Campus, Southampton, UK.ORCID https://orcid.org/0000-0001-8305-6605

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Deep learning has emerged as a robust tool for automating feature extraction from three-dimensional images, offering an efficient alternative to labour-intensive and potentially biased manual image segmentation methods. However, there has been limited exploration into the optimal training set sizes, including assessing whether artficial expansion by data augmentation can achieve consistent results in less time and how consistent these benefits are across different types of traits. In this study, we manually segmented 50 planktonic foraminifera specimens from the genus

Indexed as

data augmentationdeep learningfeature extractionimage segmentationplanktonic foraminifera

Identifiers

PMID39100182
PMCPMC11296157

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.