Evidence map›Paper›PMID 39099451›Full record

ArticleCombinatorial chemistry & high throughput screening2024

Identification of Molecular Correlations of GSDMD with Pyroptosis inAlzheimer's Disease.

Tangtang Song, Yan Chen, Chen Li, Yinhui Yao, Shuai Ma, Yazhen Shang, Jianjun Cheng

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Article in Combinatorial chemistry & high throughput screening, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

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7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

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3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Tangtang SongInstitute of Traditional Chinese Medicine, Chengde Medical College, Chengde, 067000, P.R. China.ORCID 0009-0002-4888-5314
Yan ChenInstitute of Traditional Chinese Medicine, Chengde Medical College, Chengde, 067000, P.R. China.
Chen LiInstitute of Traditional Chinese Medicine, Chengde Medical College, Chengde, 067000, P.R. China.
Yinhui YaoInstitute of Traditional Chinese Medicine, Chengde Medical College, Chengde, 067000, P.R. China.
Shuai MaInstitute of Traditional Chinese Medicine, Chengde Medical College, Chengde, 067000, P.R. China.
Yazhen ShangInstitute of Traditional Chinese Medicine, Chengde Medical College, Chengde, 067000, P.R. China.
Jianjun ChengInstitute of Traditional Chinese Medicine, Chengde Medical College, Chengde, 067000, P.R. China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

aimAn analysis of bioinformatics and cell experiments was performed to verify the relationship between gasdermin D (GSDMD), an executive protein of pyroptosis, and Alzheimer's disease (AD).

methodsThe training set GSE33000 was utilized to identify differentially expressed genes (DEGs) in both the AD group and control group, as well as in the GSDMD protein high/low expression group. Subsequently, the weighted gene co-expression network analysis (WGCNA) and the least absolute shrinkage and selection operator (LASSO) regression analysis were conducted, followed by the selection of the key genes for the subsequent Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses. The association between GSDMD and AD was assessed and confirmed in the training set GSE33000, as well as in the validation sets GSE5281 and GSE48350. Immunofluorescence (IF) was employed to detect the myelin basic protein (MBP), a distinctive protein found in the rat oligodendrocytes (OLN-93 cells). A range of concentrations (1-15 μmol/L) of β-amyloid 1-42 (Aβ

resultsA total of 7,492 DEGs were screened using GSE33000. Subsequently, WGCNA analysis identified 19 genes that exhibited the strongest correlation with clinical traits in AD. Additionally, LASSO regression analysis identified 13 key genes, including GSDMD, AFF1, and ATOH8. Furthermore, the investigation revealed that the key genes were associated with cellular inflammation based on GO and KEGG analyses. Moreover, the area under the curve (AUC) values for the key genes in the training and validation sets were determined to be 0.95 and 0.70, respectively. Significantly, GSDMD demonstrated elevated levels of expression in AD across both datasets. The positivity of MBP expression in cells exceeded 95%. As the concentration of Aβ

conclusionThe association between GSDMD and AD has been observed, and it has been found that Aβ

Indexed as

Alzheimer DiseasePhosphate-Binding ProteinsPyroptosisAmyloid beta-PeptidesAnimalsComputational BiologyGasderminsHumansIntracellular Signaling Peptides and ProteinsPeptide FragmentsRatsAmyloid beta-Peptidesamyloid beta-protein (1-42)GasderminsGSDMD protein, humanGsdmd protein, ratIntracellular Signaling Peptides and ProteinsPeptide FragmentsPhosphate-Binding ProteinsAlzheimer's diseasebioinformaticsgasdermin Doligodendrocytespyroptosis.β-amyloid 1-42

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.