Evidence map›Paper›PMID 39099090›Full record

ArticleACS chemical biology2024

Alteration of Neuropilin-1 and Heparan Sulfate Interaction Impairs Murine B16 Tumor Growth.

Chelsea D Painter, Nehru Viji Sankaranarayanan, Balaji Nagarajan, Thomas Mandel Clausen, Alan M V West, Nicollette J Setiawan, Jeeyoung Park, Ryan N Porell, Phillip L Bartels, Daniel R Sandoval and 9 more

Abstract read
In one paragraph

Article in ACS chemical biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Chelsea D PainterDepartment of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, California 92093, United States.ORCID 0000-0002-1913-5584
Nehru Viji SankaranarayananDepartment of Medicinal Chemistry, Virginia Commonwealth University, Richmond, Virginia 23298, United States.
Balaji NagarajanDepartment of Medicinal Chemistry, Virginia Commonwealth University, Richmond, Virginia 23298, United States.
Thomas Mandel ClausenDepartment of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, California 92093, United States.
Alan M V WestDepartment of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, California 92093, United States.
Nicollette J SetiawanTranslational Science and Therapeutics Division, Fred Hutchinson Cancer Center, Seattle, Washington 98109, United States.
Jeeyoung ParkDepartment of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, California 92093, United States.
Ryan N PorellGlycobiology Research and Training Center, University of California, San Diego, La Jolla, California 92093, United States.
Phillip L BartelsGlycobiology Research and Training Center, University of California, San Diego, La Jolla, California 92093, United States.
Daniel R SandovalDepartment of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, California 92093, United States.
Gabriel J VasquezDepartment of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, California 92093, United States.
John P ChuteSamuel Oschin Cancer Center, Cedars Sinai Medical Center, Los Angeles, California 90048, United States.
Kamil GodulaGlycobiology Research and Training Center, University of California, San Diego, La Jolla, California 92093, United States.ORCID 0000-0001-7953-4619
Craig W Vander KooiDepartment of Biochemistry and Molecular Biology, University of Florida, Gainesville, Florida 32610, United States.
Philip L S M GordtsGlycobiology Research and Training Center, University of California, San Diego, La Jolla, California 92093, United States.
Kevin D CorbettDepartment of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, California 92093, United States.
Christina M TerminiTranslational Science and Therapeutics Division, Fred Hutchinson Cancer Center, Seattle, Washington 98109, United States.
Umesh R DesaiDepartment of Medicinal Chemistry, Virginia Commonwealth University, Richmond, Virginia 23298, United States.ORCID 0000-0002-1976-6597
Jeffrey D EskoDepartment of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, California 92093, United States.ORCID 0000-0001-8322-1834

Funding

VIRAL MALIGNANCYP30CA023100 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DIANE M SIMEONE · 1985 to 2026
$124.9M
Transgenic & Knock-out MouseP30DK063491 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI MILES Frome WILKINSON · 2003 to 2026
$40.4M
Protein Glycosylation in the Coagulopathy and Inflammation of SepsisP01HL131474 · NHLBI · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI MARTH, JAMEY · 2016 to 2025
$26.2M
Project 3: Role of Glycosaminoglycans in HematopoiesisP01HL151333 · NHLBI · VERSITI WISCONSIN, INC. · PI HOFFMEISTER, KARIN MARIA · 2021 to 2025
$12.3M
U of Calif, San Diego Neuroscience Microscopy ImagingP30NS047101 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GLEESON, JOSEPH G, ZHENG, BINHAI · 2003 to 2022
$9.0M
Glycans in Blood Homeostasis and DiseaseK12HL141954 · NHLBI · VERSITI WISCONSIN, INC. · PI DAHMS, NANCY M., DESAI, UMESH RAMANLAL · 2018 to 2022
$4.9M
Molecular mechanisms of nucleic acid recognition and maintenance in meiosis and innate immunityR35GM144121 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Kevin Daniel Corbett · 2022 to 2026
$2.7M
Cell membrane-targeting proteoglycan chimeras as selective growth factor signaling actuatorsR01GM145913 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Kamil Godula · 2023 to 2026
$2.1M
Genetic Determinants of Epithelial DNA Damage in SmokersR01ES010377 · NIEHS · BOSTON UNIVERSITY MEDICAL CAMPUS · PI THIAGALINGAM, SAM · 2001 to 2004
$1.5M
Tool for Predicting Glycosaminoglycan Recognition of ProteinsU01CA241951 · NCI · VIRGINIA COMMONWEALTH UNIVERSITY · PI DESAI, UMESH RAMANLAL · 2019 to 2021
$991k
Enhancement of wound healing and regeneration through heparan sulfate deficiencyR61AR073031 · NIAMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ESKO, JEFFREY D · 2017 to 2018
$753k
The role of Syndecan-2 in hematopoietic stem cell maintenance and regenerationK01DK126989 · NIDDK · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI TERMINI, CHRISTINA MARIE · 2021 to 2025
$719k
NCI NIH HHS P30 CA023100NCI NIH HHS U01 CA241951NHLBI NIH HHS K12 HL141954NHLBI NIH HHS P01 HL131474NHLBI NIH HHS P01 HL151333NIAMS NIH HHS R33 AR073031NIAMS NIH HHS R61 AR073031NIDDK NIH HHS K01 DK126989NIDDK NIH HHS P30 DK063491NIEHS NIH HHS R01 ES010377NIGMS NIH HHS R01 GM145913NIGMS NIH HHS R35 GM144121NINDS NIH HHS P30 NS047101
6 · The paper itself

Abstract

Neuropilin-1 acts as a coreceptor with vascular endothelial growth factor receptors to facilitate binding of its ligand, vascular endothelial growth factor. Neuropilin-1 also binds to heparan sulfate, but the functional significance of this interaction has not been established. A combinatorial library screening using heparin oligosaccharides followed by molecular dynamics simulations of a heparin tetradecasaccharide suggested a highly conserved binding site composed of amino acid residues extending across the b1 and b2 domains of murine neuropilin-1. Mutagenesis studies established the importance of arginine513 and lysine514 for binding of heparin to a recombinant form of Nrp1 composed of the a1, a2, b1, and b2 domains. Recombinant Nrp1 protein bearing R513A,K514A mutations showed a significant loss of heparin-binding, heparin-induced dimerization, and heparin-dependent thermal stabilization. Isothermal calorimetry experiments suggested a 1:2 complex of heparin tetradecasaccharide:Nrp1. To study the impact of altered heparin binding in vivo, a mutant allele of Nrp1 bearing the R513A,K514A mutations was created in mice (

Indexed as

Heparan SulfateNeuropilin-1AnimalsBinding SitesHeparinMelanoma, ExperimentalMiceMice, Inbred C57BLMolecular Dynamics SimulationMutationProtein BindingHeparan SulfateHeparinNeuropilin-1

Identifiers

PMID39099090
PMCPMC11334110

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.