Evidence map›Paper›PMID 39098967›Full record

ArticleScientific reports2024

Comparison of ovarian mRNA expression levels in wild and hatchery-produced greater amberjack Seriola dumerili.

Anna Lavecchia, Caterina De Virgilio, Luigi Mansi, Caterina Manzari, Constantinos C Mylonas, Ernesto Picardi, Chrysovalentinos Pousis, Sharon N Cox, Gianluca Ventriglia, Rosa Zupa and 2 more

Abstract readComparative Study
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Anna LavecchiaDepartment of Biosciences, Biotechnologies and Environment, University of Bari Aldo Moro, Via Orabona 4, 70124, Bari, Italy.
Caterina De VirgilioDepartment of Biosciences, Biotechnologies and Environment, University of Bari Aldo Moro, Via Orabona 4, 70124, Bari, Italy.
Luigi MansiDepartment of Biosciences, Biotechnologies and Environment, University of Bari Aldo Moro, Via Orabona 4, 70124, Bari, Italy.
Caterina ManzariDepartment of Biosciences, Biotechnologies and Environment, University of Bari Aldo Moro, Via Orabona 4, 70124, Bari, Italy.
Constantinos C MylonasInstitute of Marine Biology, Biotechnology and Aquaculture, Hellenic Centre for Marine Research, 71003, Heraklion, Crete, Greece.
Ernesto PicardiDepartment of Biosciences, Biotechnologies and Environment, University of Bari Aldo Moro, Via Orabona 4, 70124, Bari, Italy.
Chrysovalentinos PousisDepartment of Veterinary Medicine, University of Bari Aldo Moro, S.P. per Casamassima km.3, 70010, Valenzano, BA, Italy.
Sharon N CoxDepartment of Biosciences, Biotechnologies and Environment, University of Bari Aldo Moro, Via Orabona 4, 70124, Bari, Italy.
Gianluca VentrigliaDepartment of Veterinary Medicine, University of Bari Aldo Moro, S.P. per Casamassima km.3, 70010, Valenzano, BA, Italy.
Rosa ZupaDepartment of Veterinary Medicine, University of Bari Aldo Moro, S.P. per Casamassima km.3, 70010, Valenzano, BA, Italy.
Graziano PesoleDepartment of Biosciences, Biotechnologies and Environment, University of Bari Aldo Moro, Via Orabona 4, 70124, Bari, Italy.
Aldo CorrieroDepartment of Veterinary Medicine, University of Bari Aldo Moro, S.P. per Casamassima km.3, 70010, Valenzano, BA, Italy. aldo.corriero@uniba.it.

Funding

ELIXIR-IT IR0000010EU H2020 862658
6 · The paper itself

Abstract

The greater amberjack Seriola dumerili is a promising candidate for aquaculture production. This study compares the ovary transcriptome of greater amberjack sampled in the wild (WILD) with hatchery-produced breeders reared in aquaculture sea cages in the Mediterranean Sea. Among the seven sampled cultured fish, three were classified as reproductively dysfunctional (DysF group), while four showed no signs of reproductive alteration (NormalF group). The DysF fish showed 1,166 differentially expressed genes (DEGs) compared to WILD females, and 755 DEGs compared to the NormalF. According to gene ontology (GO) analysis, DysF females exhibited enrichment of genes belonging to the biological categories classified as Secreted, ECM-receptor interaction, and Focal adhesion. Protein-protein interaction analysis revealed proteins involved in the biological categories of ECM-receptor interaction, Enzyme-linked receptor protein signaling, Wnt signal transduction pathways, and Ovulation cycle. KEGG pathway analysis showed DEGs involved in 111 pathways, including Neuroactive ligand-receptor interaction, Steroid hormone biosynthesis, Cell cycle, Oocyte meiosis, Necroptosis, Ferroptosis, Apoptosis, Autophagy, Progesterone-mediated oocyte maturation, Endocytosis and Phagosome, as well as Hedgehog, Apelin, PPAR, Notch, and GnRH signalling pathways. Additionally, DysF females exhibited factors encoded by upregulated genes associated with hypogonadism and polycystic ovary syndrome in mammals. This study -which is part of a broader research effort examining the transcriptome of the entire reproductive axis in greater amberjack of both sexes-, enhances our comprehension of the mechanisms underlying the appearance of reproductive dysfunctions when fish are reared under aquaculture conditions.

Indexed as

OvaryTranscriptomeAnimalsAquacultureFemaleFishesGene Expression ProfilingGene OntologyRNA, MessengerRNA, Messenger

Identifiers

PMID39098967
PMCPMC11298523

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.