Evidence map›Paper›PMID 39098508›Full record

ArticleThe Journal of allergy and clinical immunology2024

Spatial transcriptomics reveals organized and distinct immune activation in cutaneous granulomatous disorders.

Joseph Daccache, Eunsuh Park, Muhammad Junejo, Mariam Abdelghaffar, Erica Hwang, Chitrasen Mohanty, Chandra K Singh, Guilin Wang, John O Wheeler, Bridget E Shields and 3 more

Abstract read
In one paragraph

Article in The Journal of allergy and clinical immunology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Joseph DaccacheDepartment of Pathology, NYU Langone Health, New York, NY; Department of Dermatology, Yale School of Medicine, New Haven, Conn. Electronic address: joseph.daccache@nyulangone.org.
Eunsuh ParkDepartment of Dermatology, Yale School of Medicine, New Haven, Conn.
Muhammad JunejoDepartment of Dermatology, Yale School of Medicine, New Haven, Conn.
Mariam AbdelghaffarSchool of Medicine, Royal College of Surgeons in Ireland, Adliya, Bahrain.
Erica HwangDepartment of Dermatology, Yale School of Medicine, New Haven, Conn.
Chitrasen MohantyDepartment of Biostatistics and Medical Informatics, University of Wisconsin, Madison, Wis.
Chandra K SinghDepartment of Dermatology, University of Wisconsin School of Medicine and Public Health, Madison, Wis.
Guilin WangKeck Microarray Shared Resource, Yale School of Medicine, New Haven, Conn.
John O WheelerKeck Microarray Shared Resource, Yale School of Medicine, New Haven, Conn.
Bridget E ShieldsDepartment of Dermatology, University of Wisconsin School of Medicine and Public Health, Madison, Wis.
Caroline A NelsonDepartment of Dermatology, Yale School of Medicine, New Haven, Conn.
Yiwei WangDepartment of Dermatology, Yale School of Medicine, New Haven, Conn.
William DamskyDepartment of Dermatology, Yale School of Medicine, New Haven, Conn; Department of Pathology, Yale School of Medicine, New Haven, Conn. Electronic address: william.damsky@yale.edu.

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Short-Term Reserch Training: Students in Health SchoolsT35HL007649 · NHLBI · YALE UNIVERSITY · PI Sarwat I Chaudhry, Erica L Herzog · 1987 to 2026
$5.7M
Delineation of the immunobiology of sarcoidosis and characterization of the effects of Janus kinase inhibitionK08AI159229 · NIAID · YALE UNIVERSITY · PI DAMSKY, WILLIAM · 2021 to 2025
$861k
NCATS NIH HHS UL1 TR001863NHLBI NIH HHS T35 HL007649NIAID NIH HHS K08 AI159229
6 · The paper itself

Abstract

backgroundNoninfectious (inflammatory) cutaneous granulomatous disorders include cutaneous sarcoidosis (CS), granuloma annulare (GA), necrobiosis lipoidica (NL), and necrobiotic xanthogranuloma (NXG). These disorders share macrophage-predominant inflammation histologically, but the inflammatory architecture and the pattern of extracellular matrix alteration varies. The underlying molecular explanations for these differences remain unclear.

objectiveWe sought to understand spatial gene expression characteristics in these disorders.

methodsWe performed spatial transcriptomics in cases of CS, GA, NL, and NXG to compare patterns of immune activation and other molecular features in a spatially resolved fashion.

resultsCS is characterized by a polarized, spatially organized type 1-predominant response with classical macrophage activation. GA is characterized by a mixed but spatially organized pattern of type 1 and type 2 polarization with both classical and alternative macrophage activation. NL showed concomitant activation of type 1, type 2, and type 3 immunity with a mixed pattern of macrophage activation. Activation of type 1 immunity was shared among, CS, GA, and NL and included upregulation of IL-32. NXG showed upregulation of CXCR4-CXCL12/14 chemokine signaling and exaggerated alternative macrophage polarization. Histologic alteration of extracellular matrix correlated with hypoxia and glycolysis programs and type 2 immune activation.

conclusionsInflammatory cutaneous granulomatous disorders show distinct and spatially organized immune activation that correlate with hallmark histologic changes.

Indexed as

Macrophage ActivationSarcoidosisTranscriptomeGene Expression ProfilingGranulomaGranuloma AnnulareHumansMacrophagesMaleNecrobiosis LipoidicaSkinSkin Diseasesgranuloma annularegranulomatousnecrobiosisnecrobiosis lipoidicanecrobiotic xanthogranulomaSarcoidosisspatial transcriptomics

Identifiers

PMID39098508
PMCPMC11560686

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.