Evidence map›Paper›PMID 39097685›Full record

ArticleBMC microbiology2024

Fungal endophytes of Taxus species and regulatory effect of two strains on taxol synthesis.

Hongshan Zhang, Wanting Lin, Ruoyun Ma, Yue Zang, Kailin Hou, Zhen Xu, Xiaoyun Xi, Weiting Zhang, Shini Tang, Xueshuang Liang and 2 more

Abstract read
In one paragraph

Article in BMC microbiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Hongshan Zhang *College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, 310036, China.
Wanting Lin *College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, 310036, China.
Ruoyun Ma *College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, 310036, China.
Yue ZangCollege of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, 310036, China.
Kailin HouCollege of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, 310036, China.
Zhen XuCollege of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, 310036, China.
Xiaoyun XiCollege of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, 310036, China.
Weiting ZhangCollege of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, 310036, China.
Shini TangCollege of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, 310036, China.
Xueshuang LiangCollege of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, 310036, China.
Yiming SunCollege of Pharmaceutical Sciences, Zhejiang Chinese Medical University, Hangzhou, 311402, China. 15988855601@163.com.
Chenjia ShenCollege of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, 310036, China. shencj@hznu.edu.cn.

Funding

National Natural Science Foundation of China 32271905Postgraduate Research Innovation Project, Hangzhou Normal University 2022HSDYJSKY217Science and Technology Innovation Activity Plan (New Talent Plan) of Zhejiang Province 2023R445029Zhejiang Provincial Natural Science Foundation of China LY23C160001
6 · The paper itself

Abstract

backgroundTaxol, derived from Taxus trees, is a valuable natural resource for the development of anticancer drugs. Endophytic fungi from Taxus trees are a promising alternative source of Taxol. However, the impact of plant-endophytic microbial interaction on the host's Taxol biosynthesis is largely unknown.

resultsIn the current study, the diversity of endophytic fungi in three different Taxus species was analyzed using Internal Transcribed Spacer sequencing. A total of 271 Operational Taxonomic Units (OTUs) were identified, grouping into 2 phyla, 8 classes, 16 orders, 19 families, and 19 genera. Alpha and beta diversity analysis indicated significant differences in endophytic fungal communities among the various Taxus trees. At the genus level, Alternaria and Davidiella were predominantly found in T. mairei and T. media, respectively. By utilizing a previously published dataset, a Pearson correlation analysis was conducted to predict the taxol biosynthesis-related fungal genera. Following screening, two isolates of Alternaria (L7 and M14) were obtained. Effect of inoculation with Alternaria isolates on the gene expression and metabolite accumulation of T. mairei was determined by transcriptomic and untargeted metabolomic studies. The co-inoculation assay suggests that the two Alternaria isolates may have a negative regulatory effect on taxol biosynthesis by influencing hormone signaling pathways.

conclusionOur findings will serve as a foundation for advancing the production and utilization of Taxus and will also aid in screening endophytic fungi related to taxol production.

Indexed as

AlternariaEndophytesPaclitaxelTaxusDNA, FungalDNA, Ribosomal SpacerFungiPhylogenyDNA, FungalDNA, Ribosomal SpacerPaclitaxelCorrelation analysisDiversityEndophytic fungiITS sequencingTaxus

Identifiers

PMID39097685
PMCPMC11297650

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.