Evidence map›Paper›PMID 39097591›Full record

ArticleNature communications2024

Learning noise-induced transitions by multi-scaling reservoir computing.

Zequn Lin, Zhaofan Lu, Zengru Di, Ying Tang

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Zequn Lin *Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, Chengdu, 611731, China.ORCID http://orcid.org/0009-0001-3159-9517
Zhaofan Lu *Department of Systems Science, Faculty of Arts and Sciences, Beijing Normal University, Zhuhai, 519087, China.
Zengru DiDepartment of Systems Science, Faculty of Arts and Sciences, Beijing Normal University, Zhuhai, 519087, China.ORCID http://orcid.org/0000-0002-5240-298X
Ying TangInstitute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, Chengdu, 611731, China. jamestang23@gmail.com.ORCID http://orcid.org/0000-0002-9272-8570

Funding

National Natural Science Foundation of China (National Science Foundation of China) 12105014National Natural Science Foundation of China (National Science Foundation of China) 12322501
6 · The paper itself

Abstract

Noise is usually regarded as adversarial to extracting effective dynamics from time series, such that conventional approaches usually aim at learning dynamics by mitigating the noisy effect. However, noise can have a functional role in driving transitions between stable states underlying many stochastic dynamics. We find that leveraging a machine learning model, reservoir computing, can learn noise-induced transitions. We propose a concise training protocol with a focus on a pivotal hyperparameter controlling the time scale. The approach is widely applicable, including a bistable system with white noise or colored noise, where it generates accurate statistics of transition time for white noise and specific transition time for colored noise. Instead, the conventional approaches such as SINDy and the recurrent neural network do not faithfully capture stochastic transitions even for the case of white noise. The present approach is also aware of asymmetry of the bistable potential, rotational dynamics caused by non-detailed balance, and transitions in multi-stable systems. For the experimental data of protein folding, it learns statistics of transition time between folded states, enabling us to characterize transition dynamics from a small dataset. The results portend the exploration of extending the prevailing approaches in learning dynamics from noisy time series.

Identifiers

PMID39097591
PMCPMC11297999

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.