Evidence map›Paper›PMID 39096438›Full record

ArticleMetabolomics : Official journal of the Metabolomic Society2024

Metaboepigenetic regulation of gene expression in obesity and insulin resistance.

Swapan K Das, Mary E Comeau, Carl D Langefeld

Abstract read
In one paragraph

Article in Metabolomics : Official journal of the Metabolomic Society, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Swapan K DasDepartment of Internal Medicine, Section of Endocrinology and Metabolism, Medical Center Boulevard, Wake Forest University School of Medicine, Winston-Salem, NC, 27157, USA. sdas@wakehealth.edu.
Mary E ComeauDepartment of Biostatistics and Data Science, Wake Forest University School of Medicine, Winston-Salem, NC, USA.
Carl D LangefeldDepartment of Biostatistics and Data Science, Wake Forest University School of Medicine, Winston-Salem, NC, USA.

Funding

Genetics of African American Type 2 DiabetesR01DK066358 · NIDDK · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI NG, MAGGIE · 2003 to 2019
$6.2M
Mapping Diabetes Susceptibility by Expression Traits in African AmericansR01DK090111 · NIDDK · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI DAS, SWAPAN KUMAR · 2011 to 2015
$2.5M
Integrative Study of Genomics, Transcriptomics and Metabolomics in Type 2 DiabetesU01DK105556 · NIDDK · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI NG, MAGGIE · 2015 to 2019
$2.1M
Identifying Genetic Drivers of Expression Networks Causing Insulin ResistanceR01DK118243 · NIDDK · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI DAS, SWAPAN KUMAR · 2018 to 2020
$1.1M
American Diabetes Association 1-18-ICTS-113NIDDK NIH HHS R01 DK066358NIDDK NIH HHS R01 DK090111NIDDK NIH HHS R01 DK118243NIDDK NIH HHS U01 DK105556
6 · The paper itself

Abstract

introductionVariation in DNA methylation (DNAm) in adipose tissue is associated with the pathogenesis of obesity and insulin resistance. The activity of enzymes involved in altering DNAm levels is dependent on several metabolite cofactors.

objectivesTo understand the role of metabolites as mechanistic regulators of epigenetic marks, we tested the association between selected plasma metabolites and DNAm levels in the adipose tissue of African Americans.

methodsIn the AAGMEx cohort (N = 256), plasma levels of metabolites were measured by untargeted liquid chromatography-mass spectrometry; adipose tissue DNAm and transcript levels were measured by reduced representation bisulfite sequencing, and expression microarray, respectively.

resultsAmong the 21 one-carbon metabolism pathway metabolites evaluated, six were associated with gluco-metabolic traits (P

conclusionOur study suggests that a subset of metabolites modulates the methylation levels of CpG sites in specific loci and, in turn, regulates the expression of transcripts involved in obesity and insulin resistance.

Indexed as

DNA MethylationEpigenesis, GeneticInsulin ResistanceObesityAdipose TissueAdultFemaleGene Expression RegulationHumansMaleMetabolomicsMiddle AgedAfrican AmericanCis-eQTMDNA methylationInsulin resistanceMetaboliteObesity

Identifiers

PMID39096438
PMCPMC13310568

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.