Evidence map›Paper›PMID 39095376›Full record

ArticleNature communications2024

The lactonase BxdA mediates metabolic specialisation of maize root bacteria to benzoxazinoids.

Lisa Thoenen, Marco Kreuzer, Christine Pestalozzi, Matilde Florean, Pierre Mateo, Tobias Züst, Anlun Wei, Caitlin Giroud, Liza Rouyer, Valentin Gfeller and 10 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Lisa ThoenenInstitute of Plant Sciences, University of Bern, Bern, Switzerland.ORCID 0000-0002-0988-2690
Marco KreuzerInterfaculty Bioinformatics Unit, University of Bern, Bern, Switzerland.ORCID 0000-0001-6784-0854
Christine PestalozziDepartment of Environmental Sciences, University of Basel, Basel, Switzerland.ORCID 0000-0001-5894-9428
Matilde FloreanDepartment of Natural Product Biosynthesis, Max Planck Institute for Chemical Ecology, Jena, Germany.
Pierre MateoInstitute of Plant Sciences, University of Bern, Bern, Switzerland.ORCID 0000-0003-4338-3024
Tobias ZüstInstitute of Plant Sciences, University of Bern, Bern, Switzerland.
Anlun WeiDepartment of Environmental Sciences, University of Basel, Basel, Switzerland.ORCID 0009-0000-4726-0510
Caitlin GiroudDepartment of Environmental Sciences, University of Basel, Basel, Switzerland.
Liza RouyerLMU Biocenter, Faculty of Biology, Ludwig-Maximilians-University Munich, Martinsried, Germany.ORCID 0000-0002-5272-2633
Valentin GfellerInstitute of Plant Sciences, University of Bern, Bern, Switzerland.ORCID 0000-0001-8896-7280
Matheus D NotterInstitute for Infectious Diseases, University of Bern, Bern, Switzerland.
Eva KnochLMU Biocenter, Faculty of Biology, Ludwig-Maximilians-University Munich, Martinsried, Germany.
Siegfried HapfelmeierInstitute for Infectious Diseases, University of Bern, Bern, Switzerland.ORCID 0000-0002-6913-7932
Claude BeckerLMU Biocenter, Faculty of Biology, Ludwig-Maximilians-University Munich, Martinsried, Germany.
Niklas SchandryLMU Biocenter, Faculty of Biology, Ludwig-Maximilians-University Munich, Martinsried, Germany.ORCID 0000-0003-3099-7860
Christelle A M RobertInstitute of Plant Sciences, University of Bern, Bern, Switzerland.ORCID 0000-0003-3415-2371
Tobias G KöllnerDepartment of Natural Product Biosynthesis, Max Planck Institute for Chemical Ecology, Jena, Germany.ORCID 0000-0002-7037-904X
Rémy BruggmannInterfaculty Bioinformatics Unit, University of Bern, Bern, Switzerland.
Matthias ErbInstitute of Plant Sciences, University of Bern, Bern, Switzerland. matthias.erb@unibe.ch.
Klaus SchlaeppiInstitute of Plant Sciences, University of Bern, Bern, Switzerland. klaus.schlaeppi@unibas.ch.ORCID 0000-0003-3620-0875

Funding

EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 European Research Council (H2020 Excellent Science - European Research Council) 949595EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020) 716823Federal Department of Economic Affairs, Education and Research, Switzerland | Staatssekretariat für Bildung, Forschung und Innovation (State Secretariat for Education, Research and Innovation) M822.00079Österreichischen Akademie der Wissenschaften (Austrian Academy of Sciences) NAUniversität Bern (University of Bern) One HealthUniversität Bern (University of Bern) OneHealth
6 · The paper itself

Abstract

Root exudates contain specialised metabolites that shape the plant's root microbiome. How host-specific microbes cope with these bioactive compounds, and how this ability affects root microbiomes, remains largely unknown. We investigated how maize root bacteria metabolise benzoxazinoids, the main specialised metabolites of maize. Diverse and abundant bacteria metabolised the major compound in the maize rhizosphere MBOA (6-methoxybenzoxazolin-2(3H)-one) and formed AMPO (2-amino-7-methoxy-phenoxazin-3-one). AMPO forming bacteria were enriched in the rhizosphere of benzoxazinoid-producing maize and could use MBOA as carbon source. We identified a gene cluster associated with AMPO formation in microbacteria. The first gene in this cluster, bxdA encodes a lactonase that converts MBOA to AMPO in vitro. A deletion mutant of the homologous bxdA genes in the genus Sphingobium, did not form AMPO nor was it able to use MBOA as a carbon source. BxdA was identified in different genera of maize root bacteria. Here we show that plant-specialised metabolites select for metabolisation-competent root bacteria. BxdA represents a benzoxazinoid metabolisation gene whose carriers successfully colonize the maize rhizosphere and thereby shape the plant's chemical environmental footprint.

Indexed as

BenzoxazinesPlant RootsRhizosphereZea maysBacterial ProteinsMicrobiotaMultigene FamilySoil MicrobiologySphingomonadaceaeBacterial ProteinsBenzoxazines

Identifiers

PMID39095376
PMCPMC11297187

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.