Evidence map›Paper›PMID 39093891›Full record

ArticlePLoS pathogens2024

The S2 subunit of spike encodes diverse targets for functional antibody responses to SARS-CoV-2.

Jamie Guenthoer, Meghan E Garrett, Michelle Lilly, Delphine M Depierreux, Felicitas Ruiz, Margaret Chi, Caitlin I Stoddard, Vrasha Chohan, Zak A Yaffe, Kevin Sung and 4 more

Abstract read
In one paragraph

Article in PLoS pathogens, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Early Fc-effector antibody signatures impact COVID-19 disease trajectory.medRxiv : the preprint server for health sciences · 2026
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Structural Immunology of SARS-CoV-2.Immunological reviews · 2025
    Review
  15. Review
  16. Review
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Jamie GuenthoerHuman Biology Division, Fred Hutchinson Cancer Center, Seattle, Washington, United States of America.
Meghan E GarrettHuman Biology Division, Fred Hutchinson Cancer Center, Seattle, Washington, United States of America.
Michelle LillyHuman Biology Division, Fred Hutchinson Cancer Center, Seattle, Washington, United States of America.
Delphine M DepierreuxHuman Biology Division, Fred Hutchinson Cancer Center, Seattle, Washington, United States of America.
Felicitas RuizHuman Biology Division, Fred Hutchinson Cancer Center, Seattle, Washington, United States of America.
Margaret ChiHuman Biology Division, Fred Hutchinson Cancer Center, Seattle, Washington, United States of America.
Caitlin I StoddardHuman Biology Division, Fred Hutchinson Cancer Center, Seattle, Washington, United States of America.
Vrasha ChohanHuman Biology Division, Fred Hutchinson Cancer Center, Seattle, Washington, United States of America.
Zak A YaffeHuman Biology Division, Fred Hutchinson Cancer Center, Seattle, Washington, United States of America.
Kevin SungPublic Health Sciences Division, Fred Hutchinson Cancer Center, Seattle, Washington, United States of America.
Duncan RalphPublic Health Sciences Division, Fred Hutchinson Cancer Center, Seattle, Washington, United States of America.
Helen Y ChuDivision of Allergy and Infectious Diseases, University of Washington, Seattle, Washington, United States of America.
Frederick A MatsenPublic Health Sciences Division, Fred Hutchinson Cancer Center, Seattle, Washington, United States of America.
Julie OverbaughHuman Biology Division, Fred Hutchinson Cancer Center, Seattle, Washington, United States of America.ORCID 0000-0002-0239-9444

Funding

Comprehensive profiling of SARS-CoV-2 antibody responses and escape pathwaysR01AI138709 · NIAID · FRED HUTCHINSON CANCER RESEARCH CENTER · PI OVERBAUGH, JULIE M. · 2018 to 2022
$5.0M
Blending deep learning with probabilistic mechanistic models to predict and understand the evolution and function of adaptive immune receptorsR01AI146028 · NIAID · FRED HUTCHINSON CANCER RESEARCH CENTER · PI MATSEN, FREDERICK ALBERT · 2019 to 2024
$3.4M
Innate immune factors governing restriction of human coronavirusesK99AI171000 · NIAID · FRED HUTCHINSON CANCER CENTER · PI STODDARD, CAITLIN · 2022 to 2023
$257k
NIAID NIH HHS K99 AI171000NIAID NIH HHS R01 AI138709NIAID NIH HHS R01 AI146028
6 · The paper itself

Abstract

The SARS-CoV-2 virus responsible for the COVID-19 global pandemic has exhibited a striking capacity for viral evolution that drives continued evasion from vaccine and infection-induced immune responses. Mutations in the receptor binding domain of the S1 subunit of the spike glycoprotein have led to considerable escape from antibody responses, reducing the efficacy of vaccines and monoclonal antibody (mAb) therapies. Therefore, there is a need to interrogate more constrained regions of spike, such as the S2 subdomain. Here, we present a collection of S2 mAbs from two SARS-CoV-2 convalescent individuals that target multiple regions in S2, including regions outside of those commonly reported. One of the S2 mAbs, C20.119, which bound to a highly conserved epitope in the fusion peptide, was able to broadly neutralize across SARS-CoV-2 variants, SARS-CoV-1, and closely related zoonotic sarbecoviruses. The majority of the mAbs were non-neutralizing; however, many of them could mediate antibody-dependent cellular cytotoxicity (ADCC) at levels similar to the S1-targeting mAb S309 that was previously authorized for treatment of SARS-CoV-2 infections. Several of the mAbs with ADCC function also bound to spike trimers from other human coronaviruses (HCoVs), such as MERS-CoV and HCoV-HKU1. Our findings suggest S2 mAbs can target diverse epitopes in S2, including functional mAbs with HCoV and sarbecovirus breadth that likely target functionally constrained regions of spike. These mAbs could be developed for potential future pandemics, while also providing insight into ideal epitopes for eliciting a broad HCoV response.

Indexed as

Antibodies, MonoclonalAntibodies, ViralCOVID-19SARS-CoV-2Spike Glycoprotein, CoronavirusAntibodies, NeutralizingAntibody-Dependent Cell CytotoxicityEpitopesHumansPandemicsAntibodies, MonoclonalAntibodies, NeutralizingAntibodies, ViralEpitopesSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2

Identifiers

PMID39093891
PMCPMC11324185

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.