Evidence map›Paper›PMID 39093838›Full record

ArticlePloS one2024

Structural basis of the activation of MARTX cysteine protease domain from Vibrio vulnificus.

Lin Chen, Haider Khan, Lingchen Tan, Xiaojie Li, Gongchun Zhang, Young Jun Im

Abstract read
In one paragraph

Article in PloS one, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Lin ChenCollege of Pharmacy, Chonnam National University, Gwangju, Republic of Korea.
Haider KhanCollege of Pharmacy, Chonnam National University, Gwangju, Republic of Korea.
Lingchen TanCollege of Pharmacy, Chonnam National University, Gwangju, Republic of Korea.
Xiaojie LiCollege of Pharmacy, Chonnam National University, Gwangju, Republic of Korea.
Gongchun ZhangCollege of Pharmacy, Chonnam National University, Gwangju, Republic of Korea.
Young Jun ImCollege of Pharmacy, Chonnam National University, Gwangju, Republic of Korea.ORCID 0000-0002-3644-3028

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The multifunctional autoprocessing repeat-in-toxin (MARTX) toxin is the primary virulence factor of Vibrio vulnificus displaying cytotoxic and hemolytic properties. The cysteine protease domain (CPD) is responsible for activating the MARTX toxin by cleaving the toxin precursor and releasing the mature toxin fragments. To investigate the structural determinants for inositol hexakisphosphate (InsP6)-mediated activation of the CPD, we determined the crystal structures of unprocessed and β-flap truncated MARTX CPDs of Vibrio vulnificus strain MO6-24/O in complex with InsP6 at 1.3 and 2.2Å resolution, respectively. The CPD displays a conserved domain with a central seven-stranded β-sheet flanked by three α-helices. The scissile bond Leu3587-Ala3588 is bound in the catalytic site of the InsP6-loaded form of the Cys3727Ala mutant. InsP6 interacts with the conserved basic cleft and the β-flap inducing the active conformation of catalytic residues. The β-flap of the post-CPD is flexible in the InsP6-unbound state. The structure of the CPD Δβ-flap showed an inactive conformation of the catalytic residues due to the absence of interaction between the active site and the β-flap. This study confirms the InsP6-mediated activation of the MARTX CPDs in which InsP6-binding induces conformational changes of the catalytic residues and the β-flap that holds the N terminus of the CPD in the active site, facilitating hydrolysis of the scissile bond.

Indexed as

Phytic AcidVibrio vulnificusAmino Acid SequenceBacterial ProteinsBacterial ToxinsCatalytic DomainCrystallography, X-RayCysteine ProteasesModels, MolecularProtein DomainsBacterial ProteinsBacterial ToxinsCysteine ProteasesPhytic Acid

Identifiers

PMID39093838
PMCPMC11296635

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.