Evidence map›Paper›PMID 39093579›Full record

ArticleMicrobial biotechnology2024

Consequences of the deletion of the major specialized metabolite biosynthetic pathways of Streptomyces coelicolor on the metabolome and lipidome of this strain.

Clara Lejeune, Sonia Abreu, Florence Guérard, Ahmed Askora, Michelle David, Pierre Chaminade, Bertrand Gakière, Marie-Joelle Virolle

Abstract read
In one paragraph

Article in Microbial biotechnology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Clara LejeuneInstitut de Biologie Intégrative de la Cellule (I2BC, UMR 9198), Université Paris-Saclay, CEA, CNRS, Group MES (Métabolisme Energétique Des Streptomyces), Gif-sur-Yvette, France.
Sonia AbreuUFR Pharmacie, Université Paris-Saclay, CNRS, Group «Lipides, Systèmes Analytiques et Biologiques (Lip(Sys)2», Orsay, France.
Florence GuérardInstitut Des Sciences Des Plantes (IPS2, UMR 9213), Université Paris-Saclay, CNRS, Plateforme «SPOmics-Métabolome», Gif-sur-Yvette, France.
Ahmed AskoraInstitut de Biologie Intégrative de la Cellule (I2BC, UMR 9198), Université Paris-Saclay, CEA, CNRS, Group MES (Métabolisme Energétique Des Streptomyces), Gif-sur-Yvette, France.
Michelle DavidInstitut de Biologie Intégrative de la Cellule (I2BC, UMR 9198), Université Paris-Saclay, CEA, CNRS, Group MES (Métabolisme Energétique Des Streptomyces), Gif-sur-Yvette, France.
Pierre ChaminadeUFR Pharmacie, Université Paris-Saclay, CNRS, Group «Lipides, Systèmes Analytiques et Biologiques (Lip(Sys)2», Orsay, France.
Bertrand GakièreInstitut Des Sciences Des Plantes (IPS2, UMR 9213), Université Paris-Saclay, CNRS, Plateforme «SPOmics-Métabolome», Gif-sur-Yvette, France.
Marie-Joelle VirolleInstitut de Biologie Intégrative de la Cellule (I2BC, UMR 9198), Université Paris-Saclay, CEA, CNRS, Group MES (Métabolisme Energétique Des Streptomyces), Gif-sur-Yvette, France.ORCID 0000-0001-9509-4115

Funding

ANR BioSound-IR ANR-15-CE09-0002ANR INNOVANTIBIO from the "Direction Générale des Armées" (DGA) et "l'Agence de l'Innovation de Défense" (AID) ANR-17-ASTR-0018PROBIO3 "Investment for the Future Biotechnologies et Bioressources" n°11-BTBR-0003Public Institutions: CNRS and University Paris-Saclay
6 · The paper itself

Abstract

Chassis strains, derived from Streptomyces coelicolor M145, deleted for one or more of its four main specialized metabolites biosynthetic pathways (CPK, CDA, RED and ACT), in various combinations, were constructed for the heterologous expression of specialized metabolites biosynthetic pathways of various types and origins. To determine consequences of these deletions on the metabolism of the deleted strains comparative lipidomic and metabolomic analyses of these strains and of the original strain were carried out. These studies unexpectedly revealed that the deletion of the peptidic clusters, RED and/or CDA, in a strain deleted for the ACT cluster, resulted into a great increase in the triacylglycerol (TAG) content, whereas the deletion of polyketide clusters, ACT and CPK had no impact on TAG content. Low or high TAG content of the deleted strains was correlated with abundance or paucity in amino acids, respectively, reflecting high or low activity of oxidative metabolism. Hypotheses based on what is known on the bio-activity and the nature of the precursors of these specialized metabolites are proposed to explain the unexpected consequences of the deletion of these pathways on the metabolism of the bacteria and on the efficiency of the deleted strains as chassis strains.

Indexed as

Biosynthetic PathwaysGene DeletionMetabolomeStreptomyces coelicolorLipidomicsTriglyceridesTriglycerides

Identifiers

PMID39093579
PMCPMC11296114

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.