Evidence map›Paper›PMID 39092875›Full record

ArticleThe Plant cell2024

Active protein ubiquitination regulates xylem vessel functionality.

Pawittra Phookaew, Ya Ma, Takaomi Suzuki, Sara Christina Stolze, Anne Harzen, Ryosuke Sano, Hirofumi Nakagami, Taku Demura, Misato Ohtani

Abstract read
In one paragraph

Article in The Plant cell, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
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  3. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Pawittra PhookaewGraduate School of Science and Technology, Division of Biological Science, Nara Institute of Science and Technology, Ikoma 630-0192, Japan.ORCID 0000-0003-1470-2110
Ya MaDepartment of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa 277-8562, Japan.ORCID 0000-0002-8065-7373
Takaomi SuzukiGraduate School of Science and Technology, Division of Biological Science, Nara Institute of Science and Technology, Ikoma 630-0192, Japan.ORCID 0009-0002-0540-9473
Sara Christina StolzeProtein Mass Spectrometry, Max Planck Institute for Plant Breeding Research, Cologne 50829, Germany.ORCID 0000-0002-1421-9703
Anne HarzenProtein Mass Spectrometry, Max Planck Institute for Plant Breeding Research, Cologne 50829, Germany.ORCID 0000-0001-7370-4939
Ryosuke SanoGraduate School of Science and Technology, Division of Biological Science, Nara Institute of Science and Technology, Ikoma 630-0192, Japan.ORCID 0009-0005-5847-6620
Hirofumi NakagamiProtein Mass Spectrometry, Max Planck Institute for Plant Breeding Research, Cologne 50829, Germany.ORCID 0000-0003-2569-7062
Taku DemuraGraduate School of Science and Technology, Division of Biological Science, Nara Institute of Science and Technology, Ikoma 630-0192, Japan.ORCID 0000-0002-2499-4738
Misato OhtaniGraduate School of Science and Technology, Division of Biological Science, Nara Institute of Science and Technology, Ikoma 630-0192, Japan.ORCID 0000-0001-5429-3310

Funding

Asahi Glass FoundationG-7 Scholarship FoundationJSPS KAKENHI JP20H03271JST ASPIRE JPMJAP2306JST ERATO JPMJER1602MEXT KAKENHI JP18H05484University of Tokyo
6 · The paper itself

Abstract

Xylem vessels function in the long-distance conduction of water in land plants. The NAC transcription factor VASCULAR-RELATED NAC-DOMAIN7 (VND7) is a master regulator of xylem vessel cell differentiation in Arabidopsis (Arabidopsis thaliana). We previously isolated suppressor of ectopic xylem vessel cell differentiation induced by VND7 (seiv) mutants. Here, we report that the responsible genes for seiv3, seiv4, seiv6, and seiv9 are protein ubiquitination-related genes encoding PLANT U-BOX46 (PUB46), an uncharacterized F-BOX protein (FBX), PUB36, and UBIQUITIN-SPECIFIC PROTEASE1 (UBP1), respectively. We also found decreased expression of genes downstream of VND7 and abnormal xylem transport activity in the seiv mutants. Upon VND7 induction, ubiquitination levels from 492 and 180 protein groups were upregulated and downregulated, respectively. VND7 induction resulted in the ubiquitination of proteins for cell wall biosynthesis and protein transport, whereas such active protein ubiquitination did not occur in the seiv mutants. We detected the ubiquitination of three lysine residues in VND7: K94, K105, and K260. Substituting K94 with arginine significantly decreased the transactivation activity of VND7, suggesting that the ubiquitination of K94 is crucial for regulating VND7 activity. Our findings highlight the crucial roles of target protein ubiquitination in regulating xylem vessel activity.

Indexed as

ArabidopsisArabidopsis ProteinsGene Expression Regulation, PlantUbiquitinationUbiquitin-Protein LigasesXylemMutationTranscription FactorsArabidopsis ProteinsAt3g61390 protein, ArabidopsisTranscription FactorsUbiquitin-Protein LigasesVND7 protein, Arabidopsis

Identifiers

PMID39092875
PMCPMC11371170

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.